Detection and Tracking of SARS-CoV-2 Lineages through National Wastewater Surveillance System Pathogen Genomics

Detection and Tracking of SARS-CoV-2 Lineages through National Wastewater Surveillance System Pathogen Genomics

We conducted retrospective analysis of the emergence of the SARS-CoV-2 JN.1 variant in US wastewater during November 2023–July 2024 using Aquascope, a bioinformatics pipeline for the National Wastewater Surveillance System. This study highlights the value of open-source bioinformatics tools in trac...

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Bibliographic Details
Main Authors: Dorian J. Feistel, Rory Welsh, Jeffrey Mercante, Miguella Mark-Carew, Jason Caravas, Arun Boddapati, Samantha Sevilla, Matthew H. Seabolt, Dhwani Batra, Suchitra Chavan, Shatavia Morrison, Jesse Yoder, Hannah Long, Satvik Mishra, Benjamin Lorentz, Andi Dhroso, Iryna V. Goraichuk, Seonghye Jeon, Daniel M. Cornforth
Format: Article
Language:English
Published: Centers for Disease Control and Prevention 2025-05-01
Series:Emerging Infectious Diseases
Subjects:
wastewater surveillance
computational biology
SARS-CoV-2
COVID-19
severe acute respiratory syndrome coronavirus 2
viruses
Online Access:https://wwwnc.cdc.gov/eid/article/31/13/24-1411_article
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