Discovery of novel and highly potent small molecule inhibitors targeting FLT3-ITD for the treatment of acute myeloid leukemia using structure-based virtual screening and biological evaluation

Considering the essential role of FLT3-ITD mutations in the development of acute myeloid leukemia (AML), the research and development of FLT3 inhibitors hold significant therapeutic potential. In this study, we identified a novel, highly potent small molecule inhibitor, FLIN-4, targeting FLT3 throug...

Full description

Saved in:
Bibliographic Details
Main Authors: Kun Shi, Ye Hong, Huajing Liu, Xiaotian Yang, Fengzhen Wang, Yanming Zhang
Format: Article
Language:English
Published: Frontiers Media S.A. 2025-02-01
Series:Frontiers in Pharmacology
Subjects:
Online Access:https://www.frontiersin.org/articles/10.3389/fphar.2025.1511257/full
Tags: Add Tag
No Tags, Be the first to tag this record!
_version_ 1832548267998576640
author Kun Shi
Kun Shi
Ye Hong
Ye Hong
Ye Hong
Huajing Liu
Xiaotian Yang
Fengzhen Wang
Fengzhen Wang
Yanming Zhang
author_facet Kun Shi
Kun Shi
Ye Hong
Ye Hong
Ye Hong
Huajing Liu
Xiaotian Yang
Fengzhen Wang
Fengzhen Wang
Yanming Zhang
author_sort Kun Shi
collection DOAJ
description Considering the essential role of FLT3-ITD mutations in the development of acute myeloid leukemia (AML), the research and development of FLT3 inhibitors hold significant therapeutic potential. In this study, we identified a novel, highly potent small molecule inhibitor, FLIN-4, targeting FLT3 through structure-based virtual screening. Notably, FLIN-4 showed exceptional inhibitory effects in kinase activity inhibition assays, exhibiting a potent inhibitory effect against FLT3 (IC50 = 1.07 ± 0.04 nM). This potency was significantly superior to that of the known positive inhibitor Midostaurin, showing approximately 27 times higher inhibitory potency. Molecular dynamics simulations have confirmed the stable interaction between FLIN-4 and FLT3. Furthermore, cytotoxicity assays revealed that FLIN-4 has significant anti-proliferative activity against the AML cell line MV4-11 (IC50 = 1.31 ± 0.06 nM). Overall, these data suggest that FLIN-4, as a potential therapeutic candidate for AML, is valuable for further research and development.
format Article
id doaj-art-723ce1535922419fa60226561ef73563
institution Kabale University
issn 1663-9812
language English
publishDate 2025-02-01
publisher Frontiers Media S.A.
record_format Article
series Frontiers in Pharmacology
spelling doaj-art-723ce1535922419fa60226561ef735632025-02-03T06:33:34ZengFrontiers Media S.A.Frontiers in Pharmacology1663-98122025-02-011610.3389/fphar.2025.15112571511257Discovery of novel and highly potent small molecule inhibitors targeting FLT3-ITD for the treatment of acute myeloid leukemia using structure-based virtual screening and biological evaluationKun Shi0Kun Shi1Ye Hong2Ye Hong3Ye Hong4Huajing Liu5Xiaotian Yang6Fengzhen Wang7Fengzhen Wang8Yanming Zhang9Clinical Medical College, Xuzhou Medical University, Xuzhou, ChinaDepartment of Orthopedics, Xuzhou Central Hospital, Xuzhou Clinical School of Xuzhou Medical University, Xuzhou, ChinaClinical Medical College, Xuzhou Medical University, Xuzhou, ChinaDepartment of Hematology, The Affiliated Huai’an Hospital of Xuzhou Medical University, Huai’an, Jiangsu, ChinaDepartment of Hematology, Binhai County People’s Hospital, Yancheng, Jiangsu, ChinaJiangsu Key Laboratory of New Drug Research and Clinical Pharmacy, Xuzhou Medical University, Xuzhou, Jiangsu, ChinaDepartment of Hematology, The Affiliated Huai’an Hospital of Xuzhou Medical University, Huai’an, Jiangsu, ChinaJiangsu Key Laboratory of New Drug Research and Clinical Pharmacy, Xuzhou Medical University, Xuzhou, Jiangsu, ChinaDepartment of Pharmacy, Suining People’s Hospital Affiliated to Xuzhou Medical University, Suining, ChinaDepartment of Hematology, The Affiliated Huai’an Hospital of Xuzhou Medical University, Huai’an, Jiangsu, ChinaConsidering the essential role of FLT3-ITD mutations in the development of acute myeloid leukemia (AML), the research and development of FLT3 inhibitors hold significant therapeutic potential. In this study, we identified a novel, highly potent small molecule inhibitor, FLIN-4, targeting FLT3 through structure-based virtual screening. Notably, FLIN-4 showed exceptional inhibitory effects in kinase activity inhibition assays, exhibiting a potent inhibitory effect against FLT3 (IC50 = 1.07 ± 0.04 nM). This potency was significantly superior to that of the known positive inhibitor Midostaurin, showing approximately 27 times higher inhibitory potency. Molecular dynamics simulations have confirmed the stable interaction between FLIN-4 and FLT3. Furthermore, cytotoxicity assays revealed that FLIN-4 has significant anti-proliferative activity against the AML cell line MV4-11 (IC50 = 1.31 ± 0.06 nM). Overall, these data suggest that FLIN-4, as a potential therapeutic candidate for AML, is valuable for further research and development.https://www.frontiersin.org/articles/10.3389/fphar.2025.1511257/fullFLT3-ITD mutationacute myeloid leukemia (AML)small molecule inhibitorstructure-based virtual screeningbiological evaluation
spellingShingle Kun Shi
Kun Shi
Ye Hong
Ye Hong
Ye Hong
Huajing Liu
Xiaotian Yang
Fengzhen Wang
Fengzhen Wang
Yanming Zhang
Discovery of novel and highly potent small molecule inhibitors targeting FLT3-ITD for the treatment of acute myeloid leukemia using structure-based virtual screening and biological evaluation
Frontiers in Pharmacology
FLT3-ITD mutation
acute myeloid leukemia (AML)
small molecule inhibitor
structure-based virtual screening
biological evaluation
title Discovery of novel and highly potent small molecule inhibitors targeting FLT3-ITD for the treatment of acute myeloid leukemia using structure-based virtual screening and biological evaluation
title_full Discovery of novel and highly potent small molecule inhibitors targeting FLT3-ITD for the treatment of acute myeloid leukemia using structure-based virtual screening and biological evaluation
title_fullStr Discovery of novel and highly potent small molecule inhibitors targeting FLT3-ITD for the treatment of acute myeloid leukemia using structure-based virtual screening and biological evaluation
title_full_unstemmed Discovery of novel and highly potent small molecule inhibitors targeting FLT3-ITD for the treatment of acute myeloid leukemia using structure-based virtual screening and biological evaluation
title_short Discovery of novel and highly potent small molecule inhibitors targeting FLT3-ITD for the treatment of acute myeloid leukemia using structure-based virtual screening and biological evaluation
title_sort discovery of novel and highly potent small molecule inhibitors targeting flt3 itd for the treatment of acute myeloid leukemia using structure based virtual screening and biological evaluation
topic FLT3-ITD mutation
acute myeloid leukemia (AML)
small molecule inhibitor
structure-based virtual screening
biological evaluation
url https://www.frontiersin.org/articles/10.3389/fphar.2025.1511257/full
work_keys_str_mv AT kunshi discoveryofnovelandhighlypotentsmallmoleculeinhibitorstargetingflt3itdforthetreatmentofacutemyeloidleukemiausingstructurebasedvirtualscreeningandbiologicalevaluation
AT kunshi discoveryofnovelandhighlypotentsmallmoleculeinhibitorstargetingflt3itdforthetreatmentofacutemyeloidleukemiausingstructurebasedvirtualscreeningandbiologicalevaluation
AT yehong discoveryofnovelandhighlypotentsmallmoleculeinhibitorstargetingflt3itdforthetreatmentofacutemyeloidleukemiausingstructurebasedvirtualscreeningandbiologicalevaluation
AT yehong discoveryofnovelandhighlypotentsmallmoleculeinhibitorstargetingflt3itdforthetreatmentofacutemyeloidleukemiausingstructurebasedvirtualscreeningandbiologicalevaluation
AT yehong discoveryofnovelandhighlypotentsmallmoleculeinhibitorstargetingflt3itdforthetreatmentofacutemyeloidleukemiausingstructurebasedvirtualscreeningandbiologicalevaluation
AT huajingliu discoveryofnovelandhighlypotentsmallmoleculeinhibitorstargetingflt3itdforthetreatmentofacutemyeloidleukemiausingstructurebasedvirtualscreeningandbiologicalevaluation
AT xiaotianyang discoveryofnovelandhighlypotentsmallmoleculeinhibitorstargetingflt3itdforthetreatmentofacutemyeloidleukemiausingstructurebasedvirtualscreeningandbiologicalevaluation
AT fengzhenwang discoveryofnovelandhighlypotentsmallmoleculeinhibitorstargetingflt3itdforthetreatmentofacutemyeloidleukemiausingstructurebasedvirtualscreeningandbiologicalevaluation
AT fengzhenwang discoveryofnovelandhighlypotentsmallmoleculeinhibitorstargetingflt3itdforthetreatmentofacutemyeloidleukemiausingstructurebasedvirtualscreeningandbiologicalevaluation
AT yanmingzhang discoveryofnovelandhighlypotentsmallmoleculeinhibitorstargetingflt3itdforthetreatmentofacutemyeloidleukemiausingstructurebasedvirtualscreeningandbiologicalevaluation