The Shared and Specific Genes and a Comparative Genomics Analysis within Three Hanseniaspora Strains
Kloeckera apiculata plays an important role in the inhibition of citrus postharvest blue and green mould diseases. This study was based on the previous genome sequencing of K. apiculata strain 34-9. After homologous comparison, scaffold 27 was defined as the mitochondrial (mt) sequence of K. apicula...
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| Format: | Article |
| Language: | English |
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Wiley
2019-01-01
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| Series: | International Journal of Genomics |
| Online Access: | http://dx.doi.org/10.1155/2019/7910865 |
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| author | Kai Chen Zhonghuan Tian Fatang Jiang Yunjiang Cheng Chao-an Long |
| author_facet | Kai Chen Zhonghuan Tian Fatang Jiang Yunjiang Cheng Chao-an Long |
| author_sort | Kai Chen |
| collection | DOAJ |
| description | Kloeckera apiculata plays an important role in the inhibition of citrus postharvest blue and green mould diseases. This study was based on the previous genome sequencing of K. apiculata strain 34-9. After homologous comparison, scaffold 27 was defined as the mitochondrial (mt) sequence of K. apiculata 34-9. The comparison showed a high level of sequence identity between scaffold 27 and the known mtDNA of Hanseniaspora uvarum. The genome sequence of H. vineae T02/19AF showed several short and discontinuous fragments homologous to the mtDNA of H. uvarum. The shared and specific genes of K. apiculata, H. uvarum, and H. vineae were analysed by family using the TreeFam methodology. GO analysis was used to classify the shared and specific genes. Most of the gene families were classified into the functional categories of cellular component and metabolic processes. The whole-genome phylogram and genome synteny analysis showed that K. apiculata was more closely related to H. uvarum than to H. vineae. The genomic comparisons clearly displayed the locations of the homologous regions in each genome. This analysis could contribute to discovering the genomic similarities and differences within the genus Hanseniaspora. In addition, some regions were not collinearity-matched in the genome of K. apiculata compared with that of H. uvarum or H. vineae, and these sequences might have resulted from evolutionary variations. |
| format | Article |
| id | doaj-art-6d89ba4613814af7a110f3c8485d34e3 |
| institution | Kabale University |
| issn | 2314-436X 2314-4378 |
| language | English |
| publishDate | 2019-01-01 |
| publisher | Wiley |
| record_format | Article |
| series | International Journal of Genomics |
| spelling | doaj-art-6d89ba4613814af7a110f3c8485d34e32025-02-03T06:06:57ZengWileyInternational Journal of Genomics2314-436X2314-43782019-01-01201910.1155/2019/79108657910865The Shared and Specific Genes and a Comparative Genomics Analysis within Three Hanseniaspora StrainsKai Chen0Zhonghuan Tian1Fatang Jiang2Yunjiang Cheng3Chao-an Long4School of Bioengineering and Food, Hubei University of Technology, Wuhan 430068, ChinaKey Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan 430070, ChinaSchool of Bioengineering and Food, Hubei University of Technology, Wuhan 430068, ChinaKey Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan 430070, ChinaKey Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University, Wuhan 430070, ChinaKloeckera apiculata plays an important role in the inhibition of citrus postharvest blue and green mould diseases. This study was based on the previous genome sequencing of K. apiculata strain 34-9. After homologous comparison, scaffold 27 was defined as the mitochondrial (mt) sequence of K. apiculata 34-9. The comparison showed a high level of sequence identity between scaffold 27 and the known mtDNA of Hanseniaspora uvarum. The genome sequence of H. vineae T02/19AF showed several short and discontinuous fragments homologous to the mtDNA of H. uvarum. The shared and specific genes of K. apiculata, H. uvarum, and H. vineae were analysed by family using the TreeFam methodology. GO analysis was used to classify the shared and specific genes. Most of the gene families were classified into the functional categories of cellular component and metabolic processes. The whole-genome phylogram and genome synteny analysis showed that K. apiculata was more closely related to H. uvarum than to H. vineae. The genomic comparisons clearly displayed the locations of the homologous regions in each genome. This analysis could contribute to discovering the genomic similarities and differences within the genus Hanseniaspora. In addition, some regions were not collinearity-matched in the genome of K. apiculata compared with that of H. uvarum or H. vineae, and these sequences might have resulted from evolutionary variations.http://dx.doi.org/10.1155/2019/7910865 |
| spellingShingle | Kai Chen Zhonghuan Tian Fatang Jiang Yunjiang Cheng Chao-an Long The Shared and Specific Genes and a Comparative Genomics Analysis within Three Hanseniaspora Strains International Journal of Genomics |
| title | The Shared and Specific Genes and a Comparative Genomics Analysis within Three Hanseniaspora Strains |
| title_full | The Shared and Specific Genes and a Comparative Genomics Analysis within Three Hanseniaspora Strains |
| title_fullStr | The Shared and Specific Genes and a Comparative Genomics Analysis within Three Hanseniaspora Strains |
| title_full_unstemmed | The Shared and Specific Genes and a Comparative Genomics Analysis within Three Hanseniaspora Strains |
| title_short | The Shared and Specific Genes and a Comparative Genomics Analysis within Three Hanseniaspora Strains |
| title_sort | shared and specific genes and a comparative genomics analysis within three hanseniaspora strains |
| url | http://dx.doi.org/10.1155/2019/7910865 |
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