ICGenomics: A PROGRAM COMPLEX FOR ANALYSIS OF SYMBOL SEQUENCES IN GENOMICS
The pilot program complex for analysis of symbol sequences in genomics, ICGenomics, has been designed for storage, mining, and analysis of sequences related to theoretical and applied genomics. ICGenomics enables wet-lab biologists to perform high-quality processing of data in the fields of genomics...
Saved in:
| Main Authors: | , , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders
2014-12-01
|
| Series: | Вавиловский журнал генетики и селекции |
| Subjects: | |
| Online Access: | https://vavilov.elpub.ru/jour/article/view/70 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1832575299906174976 |
|---|---|
| author | Y. L. Orlov A. O. Bragin I. V. Medvedeva K. V. Gunbin P. S. Demenkov O. V. Vishnevsky V. G. Levitsky D. Y. Oshchepkov N. L. Podkolodnyy D. A. Afonnikov I. Grosse N. A. Kolchanov |
| author_facet | Y. L. Orlov A. O. Bragin I. V. Medvedeva K. V. Gunbin P. S. Demenkov O. V. Vishnevsky V. G. Levitsky D. Y. Oshchepkov N. L. Podkolodnyy D. A. Afonnikov I. Grosse N. A. Kolchanov |
| author_sort | Y. L. Orlov |
| collection | DOAJ |
| description | The pilot program complex for analysis of symbol sequences in genomics, ICGenomics, has been designed for storage, mining, and analysis of sequences related to theoretical and applied genomics. ICGenomics enables wet-lab biologists to perform high-quality processing of data in the fields of genomics, biomedicine, and biotechnology. ICGenomics implements both conventional and modern methods for processing, analyzing, and visualizing sequence data. They include novel methods of the processing of initial high-throughput sequencing data. Examples are: ChIP-seq analysis; functional annotation of gene regulatory regions in nucleotide and amino acid sequences; prediction of nucleosome positioning; and structural and functional annotation of proteins, including their allergenicity and evolution features. Application of ICGenomics to the analysis of genomic sequences of the parasite Opisthorchis felineus and to ChIP-seq data on the mouse and human is considered. The system is available at http://www-bionet.sscc.ru/icgenomics. |
| format | Article |
| id | doaj-art-6968d8c379c84ab4912fceebacc8defc |
| institution | Kabale University |
| issn | 2500-3259 |
| language | English |
| publishDate | 2014-12-01 |
| publisher | Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders |
| record_format | Article |
| series | Вавиловский журнал генетики и селекции |
| spelling | doaj-art-6968d8c379c84ab4912fceebacc8defc2025-02-01T09:57:59ZengSiberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and BreedersВавиловский журнал генетики и селекции2500-32592014-12-01164/173274154ICGenomics: A PROGRAM COMPLEX FOR ANALYSIS OF SYMBOL SEQUENCES IN GENOMICSY. L. Orlov0A. O. Bragin1I. V. Medvedeva2K. V. Gunbin3P. S. Demenkov4O. V. Vishnevsky5V. G. Levitsky6D. Y. Oshchepkov7N. L. Podkolodnyy8D. A. Afonnikov9I. Grosse10N. A. Kolchanov11Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaInstitute of Computer Science, Martin Luther University, Halle, GermanyInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, Russia National Research Centre «Kurchatov Institute», Moscow, RussiaThe pilot program complex for analysis of symbol sequences in genomics, ICGenomics, has been designed for storage, mining, and analysis of sequences related to theoretical and applied genomics. ICGenomics enables wet-lab biologists to perform high-quality processing of data in the fields of genomics, biomedicine, and biotechnology. ICGenomics implements both conventional and modern methods for processing, analyzing, and visualizing sequence data. They include novel methods of the processing of initial high-throughput sequencing data. Examples are: ChIP-seq analysis; functional annotation of gene regulatory regions in nucleotide and amino acid sequences; prediction of nucleosome positioning; and structural and functional annotation of proteins, including their allergenicity and evolution features. Application of ICGenomics to the analysis of genomic sequences of the parasite Opisthorchis felineus and to ChIP-seq data on the mouse and human is considered. The system is available at http://www-bionet.sscc.ru/icgenomics.https://vavilov.elpub.ru/jour/article/view/70genomicsprogram complexhigh-throughput sequencingnucleotide sequencesdata analysischip-seq |
| spellingShingle | Y. L. Orlov A. O. Bragin I. V. Medvedeva K. V. Gunbin P. S. Demenkov O. V. Vishnevsky V. G. Levitsky D. Y. Oshchepkov N. L. Podkolodnyy D. A. Afonnikov I. Grosse N. A. Kolchanov ICGenomics: A PROGRAM COMPLEX FOR ANALYSIS OF SYMBOL SEQUENCES IN GENOMICS Вавиловский журнал генетики и селекции genomics program complex high-throughput sequencing nucleotide sequences data analysis chip-seq |
| title | ICGenomics: A PROGRAM COMPLEX FOR ANALYSIS OF SYMBOL SEQUENCES IN GENOMICS |
| title_full | ICGenomics: A PROGRAM COMPLEX FOR ANALYSIS OF SYMBOL SEQUENCES IN GENOMICS |
| title_fullStr | ICGenomics: A PROGRAM COMPLEX FOR ANALYSIS OF SYMBOL SEQUENCES IN GENOMICS |
| title_full_unstemmed | ICGenomics: A PROGRAM COMPLEX FOR ANALYSIS OF SYMBOL SEQUENCES IN GENOMICS |
| title_short | ICGenomics: A PROGRAM COMPLEX FOR ANALYSIS OF SYMBOL SEQUENCES IN GENOMICS |
| title_sort | icgenomics a program complex for analysis of symbol sequences in genomics |
| topic | genomics program complex high-throughput sequencing nucleotide sequences data analysis chip-seq |
| url | https://vavilov.elpub.ru/jour/article/view/70 |
| work_keys_str_mv | AT ylorlov icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT aobragin icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT ivmedvedeva icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT kvgunbin icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT psdemenkov icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT ovvishnevsky icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT vglevitsky icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT dyoshchepkov icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT nlpodkolodnyy icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT daafonnikov icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT igrosse icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics AT nakolchanov icgenomicsaprogramcomplexforanalysisofsymbolsequencesingenomics |