The transcriptional response of cortical neurons to concussion reveals divergent fates after injury

Abstract Traumatic brain injury (TBI) is a risk factor for neurodegeneration, however little is known about how this kind of injury alters neuron subtypes. In this study, we follow neuronal populations over time after a single mild TBI (mTBI) to assess long ranging consequences of injury at the leve...

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Main Authors: Mor R. Alkaslasi, Eliza Y. H. Lloyd, Austin S. Gable, Hanna Silberberg, Hector E. Yarur, Valerie S. Tsai, Mira Sohn, Gennady Margolin, Hugo A. Tejeda, Claire E. Le Pichon
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-025-56292-0
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author Mor R. Alkaslasi
Eliza Y. H. Lloyd
Austin S. Gable
Hanna Silberberg
Hector E. Yarur
Valerie S. Tsai
Mira Sohn
Gennady Margolin
Hugo A. Tejeda
Claire E. Le Pichon
author_facet Mor R. Alkaslasi
Eliza Y. H. Lloyd
Austin S. Gable
Hanna Silberberg
Hector E. Yarur
Valerie S. Tsai
Mira Sohn
Gennady Margolin
Hugo A. Tejeda
Claire E. Le Pichon
author_sort Mor R. Alkaslasi
collection DOAJ
description Abstract Traumatic brain injury (TBI) is a risk factor for neurodegeneration, however little is known about how this kind of injury alters neuron subtypes. In this study, we follow neuronal populations over time after a single mild TBI (mTBI) to assess long ranging consequences of injury at the level of single, transcriptionally defined neuronal classes. We find that the stress-responsive Activating Transcription Factor 3 (ATF3) defines a population of cortical neurons after mTBI. Using an inducible reporter linked to ATF3, we genetically mark these damaged cells to track them over time. We find that a population in layer V undergoes cell death acutely after injury, while another in layer II/III survives long term and remains electrically active. To investigate the mechanism controlling layer V neuron death, we genetically silenced candidate stress response pathways. We found that the axon injury responsive dual leucine zipper kinase (DLK) is required for the layer V neuron death. This work provides a rationale for targeting the DLK signaling pathway as a therapeutic intervention for traumatic brain injury. Beyond this, our approach to track neurons after a mild, subclinical injury can inform our understanding of neuronal susceptibility to repeated impacts.
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spelling doaj-art-5c1cb7b7698241af86f5f571f25df6b42025-02-02T12:32:48ZengNature PortfolioNature Communications2041-17232025-01-0116111610.1038/s41467-025-56292-0The transcriptional response of cortical neurons to concussion reveals divergent fates after injuryMor R. Alkaslasi0Eliza Y. H. Lloyd1Austin S. Gable2Hanna Silberberg3Hector E. Yarur4Valerie S. Tsai5Mira Sohn6Gennady Margolin7Hugo A. Tejeda8Claire E. Le Pichon9Unit on the Development of Neurodegeneration, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of HealthUnit on the Development of Neurodegeneration, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of HealthUnit on the Development of Neurodegeneration, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of HealthUnit on the Development of Neurodegeneration, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of HealthUnit on Neuromodulation and Synaptic Integration, National Institute of Mental Health, National Institutes of HealthUnit on Neuromodulation and Synaptic Integration, National Institute of Mental Health, National Institutes of HealthBioinformatics and Scientific Programming Core, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of HealthBioinformatics and Scientific Programming Core, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of HealthUnit on Neuromodulation and Synaptic Integration, National Institute of Mental Health, National Institutes of HealthUnit on the Development of Neurodegeneration, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of HealthAbstract Traumatic brain injury (TBI) is a risk factor for neurodegeneration, however little is known about how this kind of injury alters neuron subtypes. In this study, we follow neuronal populations over time after a single mild TBI (mTBI) to assess long ranging consequences of injury at the level of single, transcriptionally defined neuronal classes. We find that the stress-responsive Activating Transcription Factor 3 (ATF3) defines a population of cortical neurons after mTBI. Using an inducible reporter linked to ATF3, we genetically mark these damaged cells to track them over time. We find that a population in layer V undergoes cell death acutely after injury, while another in layer II/III survives long term and remains electrically active. To investigate the mechanism controlling layer V neuron death, we genetically silenced candidate stress response pathways. We found that the axon injury responsive dual leucine zipper kinase (DLK) is required for the layer V neuron death. This work provides a rationale for targeting the DLK signaling pathway as a therapeutic intervention for traumatic brain injury. Beyond this, our approach to track neurons after a mild, subclinical injury can inform our understanding of neuronal susceptibility to repeated impacts.https://doi.org/10.1038/s41467-025-56292-0
spellingShingle Mor R. Alkaslasi
Eliza Y. H. Lloyd
Austin S. Gable
Hanna Silberberg
Hector E. Yarur
Valerie S. Tsai
Mira Sohn
Gennady Margolin
Hugo A. Tejeda
Claire E. Le Pichon
The transcriptional response of cortical neurons to concussion reveals divergent fates after injury
Nature Communications
title The transcriptional response of cortical neurons to concussion reveals divergent fates after injury
title_full The transcriptional response of cortical neurons to concussion reveals divergent fates after injury
title_fullStr The transcriptional response of cortical neurons to concussion reveals divergent fates after injury
title_full_unstemmed The transcriptional response of cortical neurons to concussion reveals divergent fates after injury
title_short The transcriptional response of cortical neurons to concussion reveals divergent fates after injury
title_sort transcriptional response of cortical neurons to concussion reveals divergent fates after injury
url https://doi.org/10.1038/s41467-025-56292-0
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