Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish,
The mitochondrial genome of a species is an essential resource for its effective conservation and phylogenetic studies. In this article, we present sequencing and characterization of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba collected from Khulna region of Bang...
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BioMed Central
2020-09-01
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| Series: | Genomics & Informatics |
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| Online Access: | http://genominfo.org/upload/pdf/gi-2020-18-3-e32.pdf |
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| author | Mohammad Nazrul Islam Shirin Sultana Md. Jobaidul Alam |
| author_facet | Mohammad Nazrul Islam Shirin Sultana Md. Jobaidul Alam |
| author_sort | Mohammad Nazrul Islam |
| collection | DOAJ |
| description | The mitochondrial genome of a species is an essential resource for its effective conservation and phylogenetic studies. In this article, we present sequencing and characterization of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba collected from Khulna region of Bangladesh. The complete mitochondrial genome was 16,597 bp in size, which formed a circular double-stranded DNA molecule containing a total of 37 mitochondrial genes (13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes) with two non-coding regions, an origin of light strand replication (OL) and a displacement loop (D-loop), similar structure with other fishes of Teleostei. The phylogenetic tree demonstrated its close relationship with labeonine fishes. The complete mitogenome of Cirrhinus reba (GenBank no. MN862482) showed 99.96% identity to another haplotype of Cirrhinus reba (AP013325), followed by 90.18% identity with Labeo bata (AP011198). |
| format | Article |
| id | doaj-art-562a0137f2c64f3fb9fdd557555356ab |
| institution | Kabale University |
| issn | 2234-0742 |
| language | English |
| publishDate | 2020-09-01 |
| publisher | BioMed Central |
| record_format | Article |
| series | Genomics & Informatics |
| spelling | doaj-art-562a0137f2c64f3fb9fdd557555356ab2025-02-02T22:17:15ZengBioMed CentralGenomics & Informatics2234-07422020-09-01183e3210.5808/GI.2020.18.3.e32619Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish,Mohammad Nazrul Islam0Shirin Sultana1Md. Jobaidul Alam2 Department of Biotechnology, Sher-e-Bangla Agricultural University, Dhaka 1207, Bangladesh Fisheries Biotechnology Division, National Institute of Biotechnology, Dhaka 1349, Bangladesh Department of Fisheries, Ministry of Fisheries and Livestock, Dhaka 1000, BangladeshThe mitochondrial genome of a species is an essential resource for its effective conservation and phylogenetic studies. In this article, we present sequencing and characterization of the complete mitochondrial genome of a threatened labeonine fish, Cirrhinus reba collected from Khulna region of Bangladesh. The complete mitochondrial genome was 16,597 bp in size, which formed a circular double-stranded DNA molecule containing a total of 37 mitochondrial genes (13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes) with two non-coding regions, an origin of light strand replication (OL) and a displacement loop (D-loop), similar structure with other fishes of Teleostei. The phylogenetic tree demonstrated its close relationship with labeonine fishes. The complete mitogenome of Cirrhinus reba (GenBank no. MN862482) showed 99.96% identity to another haplotype of Cirrhinus reba (AP013325), followed by 90.18% identity with Labeo bata (AP011198).http://genominfo.org/upload/pdf/gi-2020-18-3-e32.pdfcomplete mitogenomeillumina sequencingmitochondrial dnareba carpthreatened species |
| spellingShingle | Mohammad Nazrul Islam Shirin Sultana Md. Jobaidul Alam Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, Genomics & Informatics complete mitogenome illumina sequencing mitochondrial dna reba carp threatened species |
| title | Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, |
| title_full | Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, |
| title_fullStr | Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, |
| title_full_unstemmed | Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, |
| title_short | Sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish, |
| title_sort | sequencing and annotation of the complete mitochondrial genome of a threatened labeonine fish |
| topic | complete mitogenome illumina sequencing mitochondrial dna reba carp threatened species |
| url | http://genominfo.org/upload/pdf/gi-2020-18-3-e32.pdf |
| work_keys_str_mv | AT mohammadnazrulislam sequencingandannotationofthecompletemitochondrialgenomeofathreatenedlabeoninefish AT shirinsultana sequencingandannotationofthecompletemitochondrialgenomeofathreatenedlabeoninefish AT mdjobaidulalam sequencingandannotationofthecompletemitochondrialgenomeofathreatenedlabeoninefish |