NanoCore: core-genome-based bacterial genomic surveillance and outbreak detection in healthcare facilities from Nanopore and Illumina data

NanoCore: core-genome-based bacterial genomic surveillance and outbreak detection in healthcare facilities from Nanopore and Illumina data

ABSTRACT Genomic surveillance enables the early detection of pathogen transmission in healthcare facilities and contributes to the reduction of substantial patient harm. Fast turnaround times, flexible multiplexing, and low capital requirements make Nanopore sequencing well suited for genomic survei...

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Bibliographic Details
Main Authors: Sebastian A. Fuchs, Lisanna Hülse, Teresa Tamayo, Susanne Kolbe-Busch, Klaus Pfeffer, Alexander T. Dilthey
Format: Article
Language:English
Published: American Society for Microbiology 2024-11-01
Series:mSystems
Subjects:
microbial genomics
bacterial outbreak analysis
Nanopore sequencing
hybrid approaches
MLST
healthcare pathogen surveillance
Online Access:https://journals.asm.org/doi/10.1128/msystems.01080-24
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