Comparative Analysis of Begonia Plastid Genomes and Their Utility for Species-Level Phylogenetics.
Recent, rapid radiations make species-level phylogenetics difficult to resolve. We used a multiplexed, high-throughput sequencing approach to identify informative genomic regions to resolve phylogenetic relationships at low taxonomic levels in Begonia from a survey of sixteen species. A long-range P...
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| Format: | Article |
| Language: | English |
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Public Library of Science (PLoS)
2016-01-01
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| Series: | PLoS ONE |
| Online Access: | https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0153248&type=printable |
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| author | Nicola Harrison Richard J Harrison Catherine A Kidner |
| author_facet | Nicola Harrison Richard J Harrison Catherine A Kidner |
| author_sort | Nicola Harrison |
| collection | DOAJ |
| description | Recent, rapid radiations make species-level phylogenetics difficult to resolve. We used a multiplexed, high-throughput sequencing approach to identify informative genomic regions to resolve phylogenetic relationships at low taxonomic levels in Begonia from a survey of sixteen species. A long-range PCR method was used to generate draft plastid genomes to provide a strong phylogenetic backbone, identify fast evolving regions and provide informative molecular markers for species-level phylogenetic studies in Begonia. |
| format | Article |
| id | doaj-art-4f4f7b91f33e4c7ba6f47742a6bb43e4 |
| institution | Kabale University |
| issn | 1932-6203 |
| language | English |
| publishDate | 2016-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj-art-4f4f7b91f33e4c7ba6f47742a6bb43e42025-08-20T03:24:30ZengPublic Library of Science (PLoS)PLoS ONE1932-62032016-01-01114e015324810.1371/journal.pone.0153248Comparative Analysis of Begonia Plastid Genomes and Their Utility for Species-Level Phylogenetics.Nicola HarrisonRichard J HarrisonCatherine A KidnerRecent, rapid radiations make species-level phylogenetics difficult to resolve. We used a multiplexed, high-throughput sequencing approach to identify informative genomic regions to resolve phylogenetic relationships at low taxonomic levels in Begonia from a survey of sixteen species. A long-range PCR method was used to generate draft plastid genomes to provide a strong phylogenetic backbone, identify fast evolving regions and provide informative molecular markers for species-level phylogenetic studies in Begonia.https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0153248&type=printable |
| spellingShingle | Nicola Harrison Richard J Harrison Catherine A Kidner Comparative Analysis of Begonia Plastid Genomes and Their Utility for Species-Level Phylogenetics. PLoS ONE |
| title | Comparative Analysis of Begonia Plastid Genomes and Their Utility for Species-Level Phylogenetics. |
| title_full | Comparative Analysis of Begonia Plastid Genomes and Their Utility for Species-Level Phylogenetics. |
| title_fullStr | Comparative Analysis of Begonia Plastid Genomes and Their Utility for Species-Level Phylogenetics. |
| title_full_unstemmed | Comparative Analysis of Begonia Plastid Genomes and Their Utility for Species-Level Phylogenetics. |
| title_short | Comparative Analysis of Begonia Plastid Genomes and Their Utility for Species-Level Phylogenetics. |
| title_sort | comparative analysis of begonia plastid genomes and their utility for species level phylogenetics |
| url | https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0153248&type=printable |
| work_keys_str_mv | AT nicolaharrison comparativeanalysisofbegoniaplastidgenomesandtheirutilityforspecieslevelphylogenetics AT richardjharrison comparativeanalysisofbegoniaplastidgenomesandtheirutilityforspecieslevelphylogenetics AT catherineakidner comparativeanalysisofbegoniaplastidgenomesandtheirutilityforspecieslevelphylogenetics |