Beyond the nuclear border: single-cell analysis of in situ sequenced human brain tissue using cellular features

Abstract Spatial transcriptomics has advanced our understanding of cellular heterogeneity at single-cell resolution. Here, we assess the suitability of in situ sequencing (ISS) for analyzing formalin-fixed, paraffin-embedded (FFPE) postmortem human brain tissue. A key challenge in ISS data analysis...

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Bibliographic Details
Main Authors: Janssen M. Kotah, Thomas Rust, Hilmar R. J. van Weering, Janneke Bosma, Amber L. Woudstra, Susanne M. Kooistra, Bart J. L. Eggen
Format: Article
Language:English
Published: Nature Portfolio 2025-07-01
Series:Communications Biology
Online Access:https://doi.org/10.1038/s42003-025-08518-6
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