The comparative gene expression concern to the seed pigmentation in maize ( L.)
Maize seed pigmentation is one of the important issue to develop maize seed breeding. The differently gene expression was characterized and compared for three inbred lines, such as the pigment accumulated seed (CM22) and non-pigmented seed (CM5 and CM19) at 10 days after pollination. We obtained a t...
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BioMed Central
2020-09-01
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| Series: | Genomics & Informatics |
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| Online Access: | http://genominfo.org/upload/pdf/gi-2020-18-3-e29.pdf |
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| author | Kyu Jin Sa Ik-Young Choi Ju Kyong Lee |
| author_facet | Kyu Jin Sa Ik-Young Choi Ju Kyong Lee |
| author_sort | Kyu Jin Sa |
| collection | DOAJ |
| description | Maize seed pigmentation is one of the important issue to develop maize seed breeding. The differently gene expression was characterized and compared for three inbred lines, such as the pigment accumulated seed (CM22) and non-pigmented seed (CM5 and CM19) at 10 days after pollination. We obtained a total of 63,870, 82,496, and 54,555 contigs by de novo assembly to identify gene expression in the CM22, CM5, and CM19, respectably. In differentially expressed gene analysis, it was revealed that 7,044 genes were differentially expressed by at least two-fold, with 4,067 upregulated in colored maize inbred lines and 2,977 upregulated in colorless maize inbred lines. Of them,18 genes were included to the anthocyanin biosynthesis pathways, while 15 genes were upregulated in both CM22/5 and CM22/19. Additionally, 37 genes were detected in the metabolic pathway concern to the seed pigmentation by BINs analysis using MAPMAN software. Finally, these differently expressed genes may aid in the research on seed pigmentation in maize breeding programs. |
| format | Article |
| id | doaj-art-41c5f47440824f67a656c86bdef40f8c |
| institution | Kabale University |
| issn | 2234-0742 |
| language | English |
| publishDate | 2020-09-01 |
| publisher | BioMed Central |
| record_format | Article |
| series | Genomics & Informatics |
| spelling | doaj-art-41c5f47440824f67a656c86bdef40f8c2025-02-02T12:12:17ZengBioMed CentralGenomics & Informatics2234-07422020-09-01183e2910.5808/GI.2020.18.3.e29617The comparative gene expression concern to the seed pigmentation in maize ( L.)Kyu Jin Sa0Ik-Young Choi1Ju Kyong Lee2 Department of Applied Plant Sciences, College of Agriculture and Life Sciences, Kangwon National University, Chuncheon 24341, Korea Department of Agriculture and Life Industry, Kangwon National University, Chuncheon 24341, Korea Department of Applied Plant Sciences, College of Agriculture and Life Sciences, Kangwon National University, Chuncheon 24341, KoreaMaize seed pigmentation is one of the important issue to develop maize seed breeding. The differently gene expression was characterized and compared for three inbred lines, such as the pigment accumulated seed (CM22) and non-pigmented seed (CM5 and CM19) at 10 days after pollination. We obtained a total of 63,870, 82,496, and 54,555 contigs by de novo assembly to identify gene expression in the CM22, CM5, and CM19, respectably. In differentially expressed gene analysis, it was revealed that 7,044 genes were differentially expressed by at least two-fold, with 4,067 upregulated in colored maize inbred lines and 2,977 upregulated in colorless maize inbred lines. Of them,18 genes were included to the anthocyanin biosynthesis pathways, while 15 genes were upregulated in both CM22/5 and CM22/19. Additionally, 37 genes were detected in the metabolic pathway concern to the seed pigmentation by BINs analysis using MAPMAN software. Finally, these differently expressed genes may aid in the research on seed pigmentation in maize breeding programs.http://genominfo.org/upload/pdf/gi-2020-18-3-e29.pdfanthocyanincolored and colorless maizegene expressionmaizerna sequence |
| spellingShingle | Kyu Jin Sa Ik-Young Choi Ju Kyong Lee The comparative gene expression concern to the seed pigmentation in maize ( L.) Genomics & Informatics anthocyanin colored and colorless maize gene expression maize rna sequence |
| title | The comparative gene expression concern to the seed pigmentation in maize ( L.) |
| title_full | The comparative gene expression concern to the seed pigmentation in maize ( L.) |
| title_fullStr | The comparative gene expression concern to the seed pigmentation in maize ( L.) |
| title_full_unstemmed | The comparative gene expression concern to the seed pigmentation in maize ( L.) |
| title_short | The comparative gene expression concern to the seed pigmentation in maize ( L.) |
| title_sort | comparative gene expression concern to the seed pigmentation in maize l |
| topic | anthocyanin colored and colorless maize gene expression maize rna sequence |
| url | http://genominfo.org/upload/pdf/gi-2020-18-3-e29.pdf |
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