Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides

Abstract Commensal bacteria affect host health by producing various metabolites from dietary carbohydrates via bacterial glycometabolism; however, the underlying mechanism of action remains unclear. Here, we identified Streptococcus salivarius as a unique anti-obesity commensal bacterium. We found t...

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Main Authors: Hidenori Shimizu, Junki Miyamoto, Keiko Hisa, Ryuji Ohue-Kitano, Hiromi Takada, Mayu Yamano, Akari Nishida, Daiki Sasahara, Yuki Masujima, Keita Watanabe, Shota Nishikawa, Sakura Takahashi, Takako Ikeda, Yuya Nakajima, Naofumi Yoshida, Chiaki Matsuzaki, Takuya Kageyama, Ibuki Hayashi, Akari Matsuki, Ryo Akashi, Seiichi Kitahama, Masako Ueyama, Takumi Murakami, Shinsuke Inuki, Junichiro Irie, Noriko Satoh-Asahara, Hirokazu Toju, Hiroshi Mori, Shinji Nakaoka, Tomoya Yamashita, Atsushi Toyoda, Kenji Yamamoto, Hiroaki Ohno, Takane Katayama, Hiroshi Itoh, Ikuo Kimura
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-025-56470-0
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author Hidenori Shimizu
Junki Miyamoto
Keiko Hisa
Ryuji Ohue-Kitano
Hiromi Takada
Mayu Yamano
Akari Nishida
Daiki Sasahara
Yuki Masujima
Keita Watanabe
Shota Nishikawa
Sakura Takahashi
Takako Ikeda
Yuya Nakajima
Naofumi Yoshida
Chiaki Matsuzaki
Takuya Kageyama
Ibuki Hayashi
Akari Matsuki
Ryo Akashi
Seiichi Kitahama
Masako Ueyama
Takumi Murakami
Shinsuke Inuki
Junichiro Irie
Noriko Satoh-Asahara
Hirokazu Toju
Hiroshi Mori
Shinji Nakaoka
Tomoya Yamashita
Atsushi Toyoda
Kenji Yamamoto
Hiroaki Ohno
Takane Katayama
Hiroshi Itoh
Ikuo Kimura
author_facet Hidenori Shimizu
Junki Miyamoto
Keiko Hisa
Ryuji Ohue-Kitano
Hiromi Takada
Mayu Yamano
Akari Nishida
Daiki Sasahara
Yuki Masujima
Keita Watanabe
Shota Nishikawa
Sakura Takahashi
Takako Ikeda
Yuya Nakajima
Naofumi Yoshida
Chiaki Matsuzaki
Takuya Kageyama
Ibuki Hayashi
Akari Matsuki
Ryo Akashi
Seiichi Kitahama
Masako Ueyama
Takumi Murakami
Shinsuke Inuki
Junichiro Irie
Noriko Satoh-Asahara
Hirokazu Toju
Hiroshi Mori
Shinji Nakaoka
Tomoya Yamashita
Atsushi Toyoda
Kenji Yamamoto
Hiroaki Ohno
Takane Katayama
Hiroshi Itoh
Ikuo Kimura
author_sort Hidenori Shimizu
collection DOAJ
description Abstract Commensal bacteria affect host health by producing various metabolites from dietary carbohydrates via bacterial glycometabolism; however, the underlying mechanism of action remains unclear. Here, we identified Streptococcus salivarius as a unique anti-obesity commensal bacterium. We found that S. salivarius may prevent host obesity caused by excess sucrose intake via the exopolysaccharide (EPS) –short-chain fatty acid (SCFA) –carbohydrate metabolic axis in male mice. Healthy human donor-derived S. salivarius produced high EPS levels from sucrose but not from other sugars. S. salivarius abundance was significantly decreased in human donors with obesity compared with that in healthy donors, and the EPS–SCFA bacterial carbohydrate metabolic process was attenuated. Our findings reveal an important mechanism by which host–commensal interactions in glycometabolism affect energy regulation, suggesting an approach for preventing lifestyle-related diseases via prebiotics and probiotics by targeting bacteria and EPS metabolites.
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spelling doaj-art-382d9b1b3bdf494da379bf22b9a666922025-02-02T12:32:55ZengNature PortfolioNature Communications2041-17232025-01-0116111610.1038/s41467-025-56470-0Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharidesHidenori Shimizu0Junki Miyamoto1Keiko Hisa2Ryuji Ohue-Kitano3Hiromi Takada4Mayu Yamano5Akari Nishida6Daiki Sasahara7Yuki Masujima8Keita Watanabe9Shota Nishikawa10Sakura Takahashi11Takako Ikeda12Yuya Nakajima13Naofumi Yoshida14Chiaki Matsuzaki15Takuya Kageyama16Ibuki Hayashi17Akari Matsuki18Ryo Akashi19Seiichi Kitahama20Masako Ueyama21Takumi Murakami22Shinsuke Inuki23Junichiro Irie24Noriko Satoh-Asahara25Hirokazu Toju26Hiroshi Mori27Shinji Nakaoka28Tomoya Yamashita29Atsushi Toyoda30Kenji Yamamoto31Hiroaki Ohno32Takane Katayama33Hiroshi Itoh34Ikuo Kimura35Laboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-kuDepartment of Applied Biological Science, Graduate School of Agriculture, Tokyo University of Agriculture and TechnologyNoster Inc., Kamiueno, Muko-shiLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-kuLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-kuDepartment of Molecular Endocrinology, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-kuDepartment of Molecular Endocrinology, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-kuLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-kuLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-kuLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-kuDepartment of Molecular Endocrinology, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-kuLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-kuLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-kuDepartment of Endocrinology, Metabolism and Nephrology, School of Medicine, Keio University, Shinjuku-kuDepartment of Advanced Medical Technologies, National Cerebral and Cardiovascular Center Research InstituteResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural UniversityCenter for Ecological Research, Kyoto UniversityLaboratory of Ecosystems and Coevolution, Graduate School of Biostudies, Kyoto UniversityLaboratory of Mathematical Biology, Faculty of Advanced Life Science, Hokkaido UniversityLaboratory of Mathematical Biology, Faculty of Advanced Life Science, Hokkaido UniversityDepartment of Metabolic and Bariatric Surgery, Center for Obesity, Diabetes and Endocrinology, Chibune General HospitalSleep Apnea Syndrome Treatment Center, Fukujuji Hospital, Japan Anti-Tuberculosis AssociationAdvanced Genomics Center, National Institute of Genetics, YataDepartment of Bioorganic Medicinal Chemistry, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-kuDepartment of Endocrinology, Metabolism and Nephrology, School of Medicine, Keio University, Shinjuku-kuDepartment of Endocrinology, Metabolism, and Hypertension Research, Clinical Research Institute, NHO Kyoto Medical CenterLaboratory of Ecosystems and Coevolution, Graduate School of Biostudies, Kyoto UniversityAdvanced Genomics Center, National Institute of Genetics, YataLaboratory of Mathematical Biology, Faculty of Advanced Life Science, Hokkaido UniversityDivision of Advanced Medical Science, Graduate School of Science, Technology and Innovation, Kobe UniversityAdvanced Genomics Center, National Institute of Genetics, YataCenter for Innovative and Joint Research, Wakayama University, Wakayama-shiDepartment of Bioorganic Medicinal Chemistry, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-kuLaboratory of Molecular Biology and Bioresponse, Graduate School of Biostudies, Kyoto University, Sakyo-kuDepartment of Endocrinology, Metabolism and Nephrology, School of Medicine, Keio University, Shinjuku-kuLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-kuAbstract Commensal bacteria affect host health by producing various metabolites from dietary carbohydrates via bacterial glycometabolism; however, the underlying mechanism of action remains unclear. Here, we identified Streptococcus salivarius as a unique anti-obesity commensal bacterium. We found that S. salivarius may prevent host obesity caused by excess sucrose intake via the exopolysaccharide (EPS) –short-chain fatty acid (SCFA) –carbohydrate metabolic axis in male mice. Healthy human donor-derived S. salivarius produced high EPS levels from sucrose but not from other sugars. S. salivarius abundance was significantly decreased in human donors with obesity compared with that in healthy donors, and the EPS–SCFA bacterial carbohydrate metabolic process was attenuated. Our findings reveal an important mechanism by which host–commensal interactions in glycometabolism affect energy regulation, suggesting an approach for preventing lifestyle-related diseases via prebiotics and probiotics by targeting bacteria and EPS metabolites.https://doi.org/10.1038/s41467-025-56470-0
spellingShingle Hidenori Shimizu
Junki Miyamoto
Keiko Hisa
Ryuji Ohue-Kitano
Hiromi Takada
Mayu Yamano
Akari Nishida
Daiki Sasahara
Yuki Masujima
Keita Watanabe
Shota Nishikawa
Sakura Takahashi
Takako Ikeda
Yuya Nakajima
Naofumi Yoshida
Chiaki Matsuzaki
Takuya Kageyama
Ibuki Hayashi
Akari Matsuki
Ryo Akashi
Seiichi Kitahama
Masako Ueyama
Takumi Murakami
Shinsuke Inuki
Junichiro Irie
Noriko Satoh-Asahara
Hirokazu Toju
Hiroshi Mori
Shinji Nakaoka
Tomoya Yamashita
Atsushi Toyoda
Kenji Yamamoto
Hiroaki Ohno
Takane Katayama
Hiroshi Itoh
Ikuo Kimura
Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides
Nature Communications
title Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides
title_full Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides
title_fullStr Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides
title_full_unstemmed Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides
title_short Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides
title_sort sucrose preferring gut microbes prevent host obesity by producing exopolysaccharides
url https://doi.org/10.1038/s41467-025-56470-0
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