Functional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam tea
Abstract Floricoccus penangensis ML061-4 was originally isolated from the leaf surface of an Assam tea plant (Camellia sinensis var. assamica) from Northern Thailand. To assess the functions encoded by the F. penangensis ML061-4 genome, gene identification and annotation were undertaken by in silico...
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Nature Portfolio
2025-01-01
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| Series: | Scientific Reports |
| Online Access: | https://doi.org/10.1038/s41598-025-86602-x |
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| author | Patthanasak Rungsirivanich Elvina Parlindungan Jennifer Mahony Witsanu Supandee Narumol Thongwai Douwe van Sinderen |
| author_facet | Patthanasak Rungsirivanich Elvina Parlindungan Jennifer Mahony Witsanu Supandee Narumol Thongwai Douwe van Sinderen |
| author_sort | Patthanasak Rungsirivanich |
| collection | DOAJ |
| description | Abstract Floricoccus penangensis ML061-4 was originally isolated from the leaf surface of an Assam tea plant (Camellia sinensis var. assamica) from Northern Thailand. To assess the functions encoded by the F. penangensis ML061-4 genome, gene identification and annotation were undertaken by in silico analysis. The complete genome of F. penangensis ML061-4 consists of single chromosome of 2,159,127 base pairs, containing a GC content of 33.2% and encompassing 2049 predicted protein-encoding genes. A total of 1195 genes (58.0%) in the F. penangensis ML061-4 genome have assignable functions based on BlastKOALA analysis. Furthermore, 1235 genes (59.9%) were classified into six KEGG functional categories with 187 associated pathways, while 1419 genes (68.8%) were assigned a putative function by the Clusters of Orthologous Groups (COGs) database. The ML061-4 genome was evaluated for genes associated with complex carbohydrate metabolism, bacterial adhesion, virulence factors, pathogenicity, bacteriophages, antiviral defence systems as well as toxin- and antibiotic-resistance associated genes, and genes involved in toxin production, secondary metabolite biosynthesis and xenobiotics biodegradation. The obtained results support the notion of F. penangensis ML061-4 being safe for biotechnological and food industry purposes. This is the first report outlining functional genomic insights regarding a member of the genus Floricoccus. |
| format | Article |
| id | doaj-art-344c33b3828e45b99aee11fbd4e4af10 |
| institution | Kabale University |
| issn | 2045-2322 |
| language | English |
| publishDate | 2025-01-01 |
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| spelling | doaj-art-344c33b3828e45b99aee11fbd4e4af102025-01-26T12:31:13ZengNature PortfolioScientific Reports2045-23222025-01-0115111410.1038/s41598-025-86602-xFunctional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam teaPatthanasak Rungsirivanich0Elvina Parlindungan1Jennifer Mahony2Witsanu Supandee3Narumol Thongwai4Douwe van Sinderen5Department of Biology, Faculty of Science, Chiang Mai UniversitySchool of Microbiology, University College CorkSchool of Microbiology, University College CorkEngineering Science Classroom, King Mongkut’s University of Technology ThonburiDepartment of Biology, Faculty of Science, Chiang Mai UniversitySchool of Microbiology, University College CorkAbstract Floricoccus penangensis ML061-4 was originally isolated from the leaf surface of an Assam tea plant (Camellia sinensis var. assamica) from Northern Thailand. To assess the functions encoded by the F. penangensis ML061-4 genome, gene identification and annotation were undertaken by in silico analysis. The complete genome of F. penangensis ML061-4 consists of single chromosome of 2,159,127 base pairs, containing a GC content of 33.2% and encompassing 2049 predicted protein-encoding genes. A total of 1195 genes (58.0%) in the F. penangensis ML061-4 genome have assignable functions based on BlastKOALA analysis. Furthermore, 1235 genes (59.9%) were classified into six KEGG functional categories with 187 associated pathways, while 1419 genes (68.8%) were assigned a putative function by the Clusters of Orthologous Groups (COGs) database. The ML061-4 genome was evaluated for genes associated with complex carbohydrate metabolism, bacterial adhesion, virulence factors, pathogenicity, bacteriophages, antiviral defence systems as well as toxin- and antibiotic-resistance associated genes, and genes involved in toxin production, secondary metabolite biosynthesis and xenobiotics biodegradation. The obtained results support the notion of F. penangensis ML061-4 being safe for biotechnological and food industry purposes. This is the first report outlining functional genomic insights regarding a member of the genus Floricoccus.https://doi.org/10.1038/s41598-025-86602-x |
| spellingShingle | Patthanasak Rungsirivanich Elvina Parlindungan Jennifer Mahony Witsanu Supandee Narumol Thongwai Douwe van Sinderen Functional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam tea Scientific Reports |
| title | Functional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam tea |
| title_full | Functional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam tea |
| title_fullStr | Functional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam tea |
| title_full_unstemmed | Functional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam tea |
| title_short | Functional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam tea |
| title_sort | functional genomic insights into floricoccus penangensis ml061 4 isolated from leaf surface of assam tea |
| url | https://doi.org/10.1038/s41598-025-86602-x |
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