GNI Corpus Version 1.0: Annotated Full-Text Corpus of to Support Biomedical Information Extraction

Genomics & Informatics (NLM title abbreviation: Genomics Inform) is the official journal of the Korea Genome Organization. Text corpus for this journal annotated with various levels of linguistic information would be a valuable resource as the process of information extraction requires syntactic...

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Main Authors: So-Yeon Oh, Ji-Hyeon Kim, Seo-Jin Kim, Hee-Jo Nam, Hyun-Seok Park
Format: Article
Language:English
Published: BioMed Central 2018-09-01
Series:Genomics & Informatics
Subjects:
Online Access:http://genominfo.org/upload/pdf/gi-2018-16-3-75.pdf
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author So-Yeon Oh
Ji-Hyeon Kim
Seo-Jin Kim
Hee-Jo Nam
Hyun-Seok Park
author_facet So-Yeon Oh
Ji-Hyeon Kim
Seo-Jin Kim
Hee-Jo Nam
Hyun-Seok Park
author_sort So-Yeon Oh
collection DOAJ
description Genomics & Informatics (NLM title abbreviation: Genomics Inform) is the official journal of the Korea Genome Organization. Text corpus for this journal annotated with various levels of linguistic information would be a valuable resource as the process of information extraction requires syntactic, semantic, and higher levels of natural language processing. In this study, we publish our new corpus called GNI Corpus version 1.0, extracted and annotated from full texts of Genomics & Informatics, with NLTK (Natural Language ToolKit)-based text mining script. The preliminary version of the corpus could be used as a training and testing set of a system that serves a variety of functions for future biomedical text mining.
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publishDate 2018-09-01
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series Genomics & Informatics
spelling doaj-art-342d4b9b8a7b4fb9a8f0d9cc793e8b892025-02-02T01:01:00ZengBioMed CentralGenomics & Informatics2234-07422018-09-01163757710.5808/GI.2018.16.3.75517GNI Corpus Version 1.0: Annotated Full-Text Corpus of to Support Biomedical Information ExtractionSo-Yeon Oh0Ji-Hyeon Kim1Seo-Jin Kim2Hee-Jo Nam3Hyun-Seok Park4 Bioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea Bioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea Bioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea Bioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea Bioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, KoreaGenomics & Informatics (NLM title abbreviation: Genomics Inform) is the official journal of the Korea Genome Organization. Text corpus for this journal annotated with various levels of linguistic information would be a valuable resource as the process of information extraction requires syntactic, semantic, and higher levels of natural language processing. In this study, we publish our new corpus called GNI Corpus version 1.0, extracted and annotated from full texts of Genomics & Informatics, with NLTK (Natural Language ToolKit)-based text mining script. The preliminary version of the corpus could be used as a training and testing set of a system that serves a variety of functions for future biomedical text mining.http://genominfo.org/upload/pdf/gi-2018-16-3-75.pdfbiomedical text miningcorpus linguisticstext analytics
spellingShingle So-Yeon Oh
Ji-Hyeon Kim
Seo-Jin Kim
Hee-Jo Nam
Hyun-Seok Park
GNI Corpus Version 1.0: Annotated Full-Text Corpus of to Support Biomedical Information Extraction
Genomics & Informatics
biomedical text mining
corpus linguistics
text analytics
title GNI Corpus Version 1.0: Annotated Full-Text Corpus of to Support Biomedical Information Extraction
title_full GNI Corpus Version 1.0: Annotated Full-Text Corpus of to Support Biomedical Information Extraction
title_fullStr GNI Corpus Version 1.0: Annotated Full-Text Corpus of to Support Biomedical Information Extraction
title_full_unstemmed GNI Corpus Version 1.0: Annotated Full-Text Corpus of to Support Biomedical Information Extraction
title_short GNI Corpus Version 1.0: Annotated Full-Text Corpus of to Support Biomedical Information Extraction
title_sort gni corpus version 1 0 annotated full text corpus of to support biomedical information extraction
topic biomedical text mining
corpus linguistics
text analytics
url http://genominfo.org/upload/pdf/gi-2018-16-3-75.pdf
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