A virtual system-coupled molecular dynamics simulation free from experimental knowledge on binding sites: Application to RNA-ligand binding free-energy landscape

Ligand–receptor docking simulation is difficult when the biomolecules have high intrinsic flexibility. If some knowledge on the ligand–receptor complex structure or inter-molecular contact sites are presented in advance, the difficulty of docking problem considerably decreases. This paper proposes a...

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Bibliographic Details
Main Authors: Junichi Higo, Kota Kasahara, Shun Sakuraba, Gert-Jan Bekker, Narutoshi Kamiya, Ikuo Fukuda, Takuya Takahashi, Yoshifumi Fukunishi
Format: Article
Language:English
Published: The Biophysical Society of Japan 2025-06-01
Series:Biophysics and Physicobiology
Subjects:
Online Access:https://doi.org/10.2142/biophysico.bppb-v22.0011
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