Comparative Transcriptional Profiling of Two Contrasting Barley Genotypes under Salinity Stress during the Seedling Stage
Salinity is one of the major abiotic stresses that affect crop productivity. Identification of the potential novel genes responsible for salt tolerance in barley will contribute to understanding the molecular mechanism of barley responses to salt stress. We compared changes in transcriptome between...
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| Format: | Article |
| Language: | English |
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Wiley
2013-01-01
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| Series: | International Journal of Genomics |
| Online Access: | http://dx.doi.org/10.1155/2013/972852 |
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| author | Runhong Gao Ke Duan Guimei Guo Zhizhao Du Zhiwei Chen Liang Li Ting He Ruiju Lu Jianhua Huang |
| author_facet | Runhong Gao Ke Duan Guimei Guo Zhizhao Du Zhiwei Chen Liang Li Ting He Ruiju Lu Jianhua Huang |
| author_sort | Runhong Gao |
| collection | DOAJ |
| description | Salinity is one of the major abiotic stresses that affect crop productivity. Identification of the potential novel genes responsible for salt tolerance in barley will contribute to understanding the molecular mechanism of barley responses to salt stress. We compared changes in transcriptome between Hua 11 (a salt-tolerant genotype) and Hua 30 (a salt sensitive genotype) in response to salt stress at the seedling stage using barley cDNA microarrays. In total, 557 and 247 salt-responsive genes were expressed exclusively in the shoot and root tissue of the salt-tolerant genotype, respectively. Among these genes, a number of signal-related genes, transcription factors and compatible solutes were identified and some of these genes were carefully discussed. Notably, a LysM RLK was firstly found involved in salt stress response. Moreover, key enzymes in the pathways of jasmonic acid biosynthesis, lipid metabolism and indole-3-acetic acid homeostasis were specifically affected by salt stress in salt tolerance genotype. These salt-responsive genes and biochemical pathways identified in this study could provide further information for understanding the mechanisms of salt tolerance in barley. |
| format | Article |
| id | doaj-art-20232e7df65a423a979e9814135f5617 |
| institution | Kabale University |
| issn | 2314-436X 2314-4378 |
| language | English |
| publishDate | 2013-01-01 |
| publisher | Wiley |
| record_format | Article |
| series | International Journal of Genomics |
| spelling | doaj-art-20232e7df65a423a979e9814135f56172025-02-03T05:43:58ZengWileyInternational Journal of Genomics2314-436X2314-43782013-01-01201310.1155/2013/972852972852Comparative Transcriptional Profiling of Two Contrasting Barley Genotypes under Salinity Stress during the Seedling StageRunhong Gao0Ke Duan1Guimei Guo2Zhizhao Du3Zhiwei Chen4Liang Li5Ting He6Ruiju Lu7Jianhua Huang8Biotech Research Institute, Shanghai Academy of Agricultural Sciences, Beidi Road 2901, Minhang District, Shanghai 201106, ChinaBiotech Research Institute, Shanghai Academy of Agricultural Sciences, Beidi Road 2901, Minhang District, Shanghai 201106, ChinaBiotech Research Institute, Shanghai Academy of Agricultural Sciences, Beidi Road 2901, Minhang District, Shanghai 201106, ChinaBiotech Research Institute, Shanghai Academy of Agricultural Sciences, Beidi Road 2901, Minhang District, Shanghai 201106, ChinaBiotech Research Institute, Shanghai Academy of Agricultural Sciences, Beidi Road 2901, Minhang District, Shanghai 201106, ChinaBiotech Research Institute, Shanghai Academy of Agricultural Sciences, Beidi Road 2901, Minhang District, Shanghai 201106, ChinaBiotech Research Institute, Shanghai Academy of Agricultural Sciences, Beidi Road 2901, Minhang District, Shanghai 201106, ChinaBiotech Research Institute, Shanghai Academy of Agricultural Sciences, Beidi Road 2901, Minhang District, Shanghai 201106, ChinaBiotech Research Institute, Shanghai Academy of Agricultural Sciences, Beidi Road 2901, Minhang District, Shanghai 201106, ChinaSalinity is one of the major abiotic stresses that affect crop productivity. Identification of the potential novel genes responsible for salt tolerance in barley will contribute to understanding the molecular mechanism of barley responses to salt stress. We compared changes in transcriptome between Hua 11 (a salt-tolerant genotype) and Hua 30 (a salt sensitive genotype) in response to salt stress at the seedling stage using barley cDNA microarrays. In total, 557 and 247 salt-responsive genes were expressed exclusively in the shoot and root tissue of the salt-tolerant genotype, respectively. Among these genes, a number of signal-related genes, transcription factors and compatible solutes were identified and some of these genes were carefully discussed. Notably, a LysM RLK was firstly found involved in salt stress response. Moreover, key enzymes in the pathways of jasmonic acid biosynthesis, lipid metabolism and indole-3-acetic acid homeostasis were specifically affected by salt stress in salt tolerance genotype. These salt-responsive genes and biochemical pathways identified in this study could provide further information for understanding the mechanisms of salt tolerance in barley.http://dx.doi.org/10.1155/2013/972852 |
| spellingShingle | Runhong Gao Ke Duan Guimei Guo Zhizhao Du Zhiwei Chen Liang Li Ting He Ruiju Lu Jianhua Huang Comparative Transcriptional Profiling of Two Contrasting Barley Genotypes under Salinity Stress during the Seedling Stage International Journal of Genomics |
| title | Comparative Transcriptional Profiling of Two Contrasting Barley Genotypes under Salinity Stress during the Seedling Stage |
| title_full | Comparative Transcriptional Profiling of Two Contrasting Barley Genotypes under Salinity Stress during the Seedling Stage |
| title_fullStr | Comparative Transcriptional Profiling of Two Contrasting Barley Genotypes under Salinity Stress during the Seedling Stage |
| title_full_unstemmed | Comparative Transcriptional Profiling of Two Contrasting Barley Genotypes under Salinity Stress during the Seedling Stage |
| title_short | Comparative Transcriptional Profiling of Two Contrasting Barley Genotypes under Salinity Stress during the Seedling Stage |
| title_sort | comparative transcriptional profiling of two contrasting barley genotypes under salinity stress during the seedling stage |
| url | http://dx.doi.org/10.1155/2013/972852 |
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