Effect of the B chromosome-located long non-coding RNAs on gene expression in maize
Using artificial chromosomes in maize breeding allows for site-specific integration of multigene stacks, effectively overcoming the limitations of conventional transgenic approaches. The maize B chromosome, which is dispensable and highly heterochromatic, has minimal impact on phenotypes at low copy...
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| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2025-02-01
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| Series: | Crop Design |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2772899424000405 |
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| Summary: | Using artificial chromosomes in maize breeding allows for site-specific integration of multigene stacks, effectively overcoming the limitations of conventional transgenic approaches. The maize B chromosome, which is dispensable and highly heterochromatic, has minimal impact on phenotypes at low copy numbers, making it a promising platform for engineering artificial chromosomes. However, recent studies have demonstrated that the maize B chromosome can impact gene expression and recombination on the A chromosome. Understanding the genetic characteristics of the B chromosomes and their impact on gene expression is essential for their application in artificial chromosome construction. Despite advancements in elucidating how the B chromosome affects A chromosome expression, the role of long non-coding RNAs (lncRNAs) in this context remains unclear. In this study, we analyzed the RNA-seq data from leaf tissue of plants with 0–7 B chromosomes, identifying a total of 1614 lncRNAs, including 1516 A chromosome-located and 98 B chromosome-located lncRNAs, 72 of which are specific to the B chromosome. While A-located lncRNAs show greater dependence on the mere presence of the B chromosome, the expression of B-located lncRNAs is significantly affected by the number of B chromosomes present. Regulatory networks constructed in this study suggest that B-located lncRNAs may drive the differential expression of A chromosome-located transcription factors and genes associated with circadian rhythm regulation, indicating their regulatory role in A chromosome gene expression. |
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| ISSN: | 2772-8994 |