Chromosome-level genome assembly of Cyperus iria, an aggressive weed of rice
Abstract Cyperus iria is an aggressive weed of rice throughout the world. Until now, the reference genome of C. iria has not been published. Here, we completed the chromosome-level genome assembly of C. iria based on Illumina, PacBio and Hi-C reads. The assembled genome size of C. iria was 479.08 Mb...
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2025-01-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-025-04470-6 |
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| author | Siyu Yang Qingyi Cao Zexin Wen Aoxue Wang Shiyao Shi Zhuoying Liang Shuying Li Wenjun Gui Jinwen Zhu |
| author_facet | Siyu Yang Qingyi Cao Zexin Wen Aoxue Wang Shiyao Shi Zhuoying Liang Shuying Li Wenjun Gui Jinwen Zhu |
| author_sort | Siyu Yang |
| collection | DOAJ |
| description | Abstract Cyperus iria is an aggressive weed of rice throughout the world. Until now, the reference genome of C. iria has not been published. Here, we completed the chromosome-level genome assembly of C. iria based on Illumina, PacBio and Hi-C reads. The assembled genome size of C. iria was 479.08 Mb with a contig N50 of 7.02 Mb. 68 pseudochromosomes were produced using Hi-C scaffolding, accounting for 99.65% of the assembled genome. The number of predicted protein-coding genes is 47,395, of which 93.26% were annotated, and 37.69% repetitive sequences were identified. Our study provided a valuable genomic resource for the molecular biology research and the management of C. iria. |
| format | Article |
| id | doaj-art-08f569c628374b2197c84e242174e580 |
| institution | Kabale University |
| issn | 2052-4463 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj-art-08f569c628374b2197c84e242174e5802025-01-26T12:14:34ZengNature PortfolioScientific Data2052-44632025-01-011211810.1038/s41597-025-04470-6Chromosome-level genome assembly of Cyperus iria, an aggressive weed of riceSiyu Yang0Qingyi Cao1Zexin Wen2Aoxue Wang3Shiyao Shi4Zhuoying Liang5Shuying Li6Wenjun Gui7Jinwen Zhu8Institute of Pesticide and Environmental Toxicology, Zhejiang UniversityInstitute of Pesticide and Environmental Toxicology, Zhejiang UniversityInstitute of Pesticide and Environmental Toxicology, Zhejiang UniversityInstitute of Pesticide and Environmental Toxicology, Zhejiang UniversityInstitute of Pesticide and Environmental Toxicology, Zhejiang UniversityInstitute of Pesticide and Environmental Toxicology, Zhejiang UniversityInstitute of Pesticide and Environmental Toxicology, Zhejiang UniversityInstitute of Pesticide and Environmental Toxicology, Zhejiang UniversityInstitute of Pesticide and Environmental Toxicology, Zhejiang UniversityAbstract Cyperus iria is an aggressive weed of rice throughout the world. Until now, the reference genome of C. iria has not been published. Here, we completed the chromosome-level genome assembly of C. iria based on Illumina, PacBio and Hi-C reads. The assembled genome size of C. iria was 479.08 Mb with a contig N50 of 7.02 Mb. 68 pseudochromosomes were produced using Hi-C scaffolding, accounting for 99.65% of the assembled genome. The number of predicted protein-coding genes is 47,395, of which 93.26% were annotated, and 37.69% repetitive sequences were identified. Our study provided a valuable genomic resource for the molecular biology research and the management of C. iria.https://doi.org/10.1038/s41597-025-04470-6 |
| spellingShingle | Siyu Yang Qingyi Cao Zexin Wen Aoxue Wang Shiyao Shi Zhuoying Liang Shuying Li Wenjun Gui Jinwen Zhu Chromosome-level genome assembly of Cyperus iria, an aggressive weed of rice Scientific Data |
| title | Chromosome-level genome assembly of Cyperus iria, an aggressive weed of rice |
| title_full | Chromosome-level genome assembly of Cyperus iria, an aggressive weed of rice |
| title_fullStr | Chromosome-level genome assembly of Cyperus iria, an aggressive weed of rice |
| title_full_unstemmed | Chromosome-level genome assembly of Cyperus iria, an aggressive weed of rice |
| title_short | Chromosome-level genome assembly of Cyperus iria, an aggressive weed of rice |
| title_sort | chromosome level genome assembly of cyperus iria an aggressive weed of rice |
| url | https://doi.org/10.1038/s41597-025-04470-6 |
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