Using target enrichment sequencing to study the higher-level phylogeny of the largest lichen-forming fungi family: Parmeliaceae (Ascomycota)

Using target enrichment sequencing to study the higher-level phylogeny of the largest lichen-forming fungi family: Parmeliaceae (Ascomycota)

Abstract Parmeliaceae is the largest family of lichen-forming fungi with a worldwide distribution. We used a target enrichment data set and a qualitative selection method for 250 out of 350 genes to infer the phylogeny of the major clades in this family including 81 taxa, with both subfamilies and a...

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Bibliographic Details
Main Authors: Felix Grewe, Claudio Ametrano, Todd J. Widhelm, Steven Leavitt, Isabel Distefano, Wetchasart Polyiam, David Pizarro, Mats Wedin, Ana Crespo, Pradeep K. Divakar, H. Thorsten Lumbsch
Format: Article
Language:English
Published: BMC 2020-12-01
Series:IMA Fungus
Subjects:
Next-generation sequencing
Target capture
HybPiper
Phylogenomics
Maximum likelihood
Bayesian interference
Online Access:https://doi.org/10.1186/s43008-020-00051-x
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