Inferring Strain Mixture within Clinical Plasmodium falciparum Isolates from Genomic Sequence Data. by John D O'Brien, Zamin Iqbal, Jason Wendler, Lucas Amenga-Etego

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High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs. by Alexander T Dilthey, Pierre-Antoine Gourraud, Alexander J Mentzer, Nezih Cereb, Zamin Iqbal, Gil McVean

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Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences. by Grace A Blackwell, Martin Hunt, Kerri M Malone, Leandro Lima, Gal Horesh, Blaise T F Alako, Nicholas R Thomson, Zamin Iqbal

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Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs. by Richard M Leggett, Ricardo H Ramirez-Gonzalez, Walter Verweij, Cintia G Kawashima, Zamin Iqbal, Jonathan D G Jones, Mario Caccamo, Daniel Maclean

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TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data. by Sophie Gagnon, Emmanuelle Ametepe, Floriane Point, William Cloutier Charette, Arpita Chakravarti, Paul Rivest, Pierre-Marie Akochy, Hafid Soualhine, Zamin Iqbal, Michael B Hall, Simon Grandjean Lapierre

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TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data by Sophie Gagnon, Emmanuelle Ametepe, Floriane Point, William Cloutier Charette, Arpita Chakravarti, Paul Rivest, Pierre-Marie Akochy, Hafid Soualhine, Zamin Iqbal, Michael B. Hall, Simon Grandjean Lapierre

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Genomic perspective on the bacillus causing paratyphoid B fever by Jane Hawkey, Lise Frézal, Alicia Tran Dien, Anna Zhukova, Derek Brown, Marie Anne Chattaway, Sandra Simon, Hidemasa Izumiya, Patricia I. Fields, Niall De Lappe, Lidia Kaftyreva, Xuebin Xu, Junko Isobe, Dominique Clermont, Elisabeth Njamkepo, Yukihiro Akeda, Sylvie Issenhuth-Jeanjean, Mariia Makarova, Yanan Wang, Martin Hunt, Brent M. Jenkins, Magali Ravel, Véronique Guibert, Estelle Serre, Zoya Matveeva, Laëtitia Fabre, Martin Cormican, Min Yue, Baoli Zhu, Masatomo Morita, Zamin Iqbal, Carolina Silva Nodari, Maria Pardos de la Gandara, François-Xavier Weill

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