A mechanism-informed deep neural network enables prioritization of regulators that drive cell state transitions by Xi Xi, Jiaqi Li, Jinmeng Jia, Qiuchen Meng, Chen Li, Xiaowo Wang, Lei Wei, Xuegong Zhang

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Evaluation of the ABC pathway in patients with atrial fibrillation: A machine learning cluster analysis by Jingyang Wang, Haiyang Bian, Jiangshan Tan, Jun Zhu, Lulu Wang, Wei Xu, Lei Wei, Xuegong Zhang, Yanmin Yang

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scStateDynamics: deciphering the drug-responsive tumor cell state dynamics by modeling single-cell level expression changes by Wenbo Guo, Xinqi Li, Dongfang Wang, Nan Yan, Qifan Hu, Fan Yang, Xuegong Zhang, Jianhua Yao, Jin Gu

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CellMemory: hierarchical interpretation of out-of-distribution cells using bottlenecked transformer by Qifei Wang, He Zhu, Yiwen Hu, Yanjie Chen, Yuwei Wang, Guochao Li, Yun Li, Jinfeng Chen, Xuegong Zhang, James Zou, Manolis Kellis, Yue Li, Dianbo Liu, Lan Jiang

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Epigenetic Switch Driven by DNA Inversions Dictates Phase Variation in Streptococcus pneumoniae. by Jing Li, Jing-Wen Li, Zhixing Feng, Juanjuan Wang, Haoran An, Yanni Liu, Yang Wang, Kailing Wang, Xuegong Zhang, Zhun Miao, Wenbo Liang, Robert Sebra, Guilin Wang, Wen-Ching Wang, Jing-Ren Zhang

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