A multi-species benchmark for training and validating mass spectrometry proteomics machine learning models by Bo Wen, William Stafford Noble

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High resolution models of transcription factor-DNA affinities improve in vitro and in vivo binding predictions. by Phaedra Agius, Aaron Arvey, William Chang, William Stafford Noble, Christina Leslie

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Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism. by Zoi E Sychev, Alex Hu, Terri A DiMaio, Anthony Gitter, Nathan D Camp, William S Noble, Alejandro Wolf-Yadlin, Michael Lagunoff

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Sceptic: pseudotime analysis for time-series single-cell sequencing and imaging data by Gang Li, Hyeon-Jin Kim, Sriram Pendyala, Ran Zhang, Jean-Philippe Vert, Christine M. Disteche, Xinxian Deng, Douglas M. Fowler, William Stafford Noble

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Harmful algal blooms are preceded by a predictable and quantifiable shift in the oceanic microbiome by Miranda C. Mudge, Michael Riffle, Gabriella Chebli, Deanna L. Plubell, Tatiana A. Rynearson, William S. Noble, Emma Timmins-Schiffman, Julia Kubanek, Brook L. Nunn

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CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation by He Fang, Ana R. Tronco, Giancarlo Bonora, Truong Nguyen, Jitendra Thakur, Joel B. Berletch, Galina N. Filippova, Steven Henikoff, Jay Shendure, William S. Noble, Zhijun Duan, Christine M. Disteche, Xinxian Deng

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Enrichment of extracellular vesicles using Mag-Net for the analysis of the plasma proteome by Christine C. Wu, Kristine A. Tsantilas, Jea Park, Deanna Plubell, Justin A. Sanders, Previn Naicker, Ireshyn Govender, Sindisiwe Buthelezi, Stoyan Stoychev, Justin Jordaan, Gennifer Merrihew, Eric Huang, Edward D. Parker, Michael Riffle, Andrew N. Hoofnagle, William S. Noble, Kathleen L. Poston, Thomas J. Montine, Michael J. MacCoss

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Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles by Jacob Matthew Schreiber, Carles A. Boix, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang, Jen-Chien Chang, Alex Hawkins-Hooker, Bernhard Schölkopf, Gabriele Schweikert, Mateo Rojas Carulla, Arif Canakoglu, Francesco Guzzo, Luca Nanni, Marco Masseroli, Mark James Carman, Pietro Pinoli, Chenyang Hong, Kevin Y. Yip, Jefrey P. Spence, Sanjit Singh Batra, Yun S. Song, Shaun Mahony, Zheng Zhang, Wuwei Tan, Yang Shen, Yuanfei Sun, Minyi Shi, Jessika Adrian, Richard S. Sandstrom, Nina P. Farrell, Jessica M. Halow, Kristen Lee, Lixia Jiang, Xinqiong Yang, Charles B. Epstein, J. Seth Strattan, Bradley E. Bernstein, Michael P. Snyder, Manolis Kellis, William S. Noble, Anshul Bharat Kundaje, ENCODE Imputation Challenge Participants

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The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles by Jacob Matthew Schreiber, Carles A. Boix, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang, Jen-Chien Chang, Alex Hawkins-Hooker, Bernhard Schölkopf, Gabriele Schweikert, Mateo Rojas Carulla, Arif Canakoglu, Francesco Guzzo, Luca Nanni, Marco Masseroli, Mark James Carman, Pietro Pinoli, Chenyang Hong, Kevin Y. Yip, Jefrey P. Spence, Sanjit Singh Batra, Yun S. Song, Shaun Mahony, Zheng Zhang, Wuwei Tan, Yang Shen, Yuanfei Sun, Minyi Shi, Jessika Adrian, Richard S. Sandstrom, Nina P. Farrell, Jessica M. Halow, Kristen Lee, Lixia Jiang, Xinqiong Yang, Charles B. Epstein, J. Seth Strattan, Bradley E. Bernstein, Michael P. Snyder, Manolis Kellis, William S. Noble, Anshul Bharat Kundaje, ENCODE Imputation Challenge Participants

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