Vineet Bafna

Vineet Bafna is an Indian bioinformatician and professor of computer science and director of bioinformatics program at University of California, San Diego. He was elected a Fellow of the International Society for Computational Biology (ISCB) in 2019 for outstanding contributions to the fields of computational biology and bioinformatics. He has also been a member of the Research in Computational Molecular Biology (RECOMB) conference steering committee. Provided by Wikipedia
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  1. 1
    Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer.

    Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer. by Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J Raphael

    Published 2008-04-01
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  2. 2
    36: OMKar: Optical map based automated karyotyping of genomes to identify constitutional abnormalities

    36: OMKar: Optical map based automated karyotyping of genomes to identify constitutional abnormalities by Siavash Raeisi Dehkordi, Zhaoyang Jia, Joey Estabrook, Jen Hauenstein, Neil Miller, Alex Hastie, Andy Wing Chun Pang, Vineet Bafna

    Published 2025-01-01
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  3. 3
    Analysis of targeted and whole genome sequencing of PacBio HiFi reads for a comprehensive genotyping of gene-proximal and phenotype-associated Variable Number Tandem Repeats.

    Analysis of targeted and whole genome sequencing of PacBio HiFi reads for a comprehensive genotyping of gene-proximal and phenotype-associated Variable Number Tandem Repeats. by Sara Javadzadeh, Aaron Adamson, Jonghun Park, Se-Young Jo, Yuan-Chun Ding, Mehrdad Bakhtiari, Vikas Bansal, Susan L Neuhausen, Vineet Bafna

    Published 2025-04-01
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  4. 4
    The TGFβ1 Promoter SNP C-509T and Food Sensitization Promote Esophageal Remodeling in Pediatric Eosinophilic Esophagitis.

    The TGFβ1 Promoter SNP C-509T and Food Sensitization Promote Esophageal Remodeling in Pediatric Eosinophilic Esophagitis. by Renee Rawson, Arjun Anilkumar, Robert O Newbury, Vineet Bafna, Melissa Aquino, Jacob Palmquist, Hal M Hoffman, James L Mueller, Ranjan Dohil, David H Broide, Seema S Aceves

    Published 2015-01-01
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  5. 5
    Inhibition of human-HPV hybrid ecDNA enhancers reduces oncogene expression and tumor growth in oropharyngeal cancer

    Inhibition of human-HPV hybrid ecDNA enhancers reduces oncogene expression and tumor growth in oropharyngeal cancer by Takuya Nakagawa, Jens Luebeck, Kaiyuan Zhu, Joshua T. Lange, Roman Sasik, Chad Phillips, Sayed Sadat, Sara Javadzadeh, Qian Yang, Abdula Monther, Santiago Fassardi, Allen Wang, Kersi Pestonjamasp, Brin Rosenthal, Kathleen M. Fisch, Paul Mischel, Vineet Bafna, Joseph A. Califano

    Published 2025-03-01
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  6. 6
    Breakage fusion bridge cycles drive high oncogene number with moderate intratumoural heterogeneity

    Breakage fusion bridge cycles drive high oncogene number with moderate intratumoural heterogeneity by Siavash Raeisi Dehkordi, Ivy Tsz-Lo Wong, Jing Ni, Jens Luebeck, Kaiyuan Zhu, Gino Prasad, Lena Krockenberger, Guanghui Xu, Biswanath Chowdhury, Utkrisht Rajkumar, Ann Caplin, Daniel Muliaditan, Aditi Gnanasekar, Ceyda Coruh, Qiushi Jin, Kristen Turner, Shu Xian Teo, Andy Wing Chun Pang, Ludmil B. Alexandrov, Christelle En Lin Chua, Frank B. Furnari, John Maciejowski, Thomas G. Paulson, Julie A. Law, Howard Y. Chang, Feng Yue, Ramanuj DasGupta, Jean Zhao, Paul S. Mischel, Vineet Bafna

    Published 2025-02-01
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