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Transposon-directed insertion-site sequencing (TraDIS) analysis of Enterococcus faecium using nanopore sequencing and a WebAssembly analysis platform by Alexandra L. Krause, Wytamma Wirth, Adrianna M. Turner, Louise Judd, Lucy Li, Willem van Schaik, Benjamin P. Howden, Glen P. Carter, Torsten Seemann, Ryan Wick, Timothy P. Stinear, Andrew H. Buultjens, Ian R. Monk
Published 2025-07-01Get full text
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BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows by Nikolaos Strepis, Dennis Dollee, Donny Vrins, Kevin Vanneste, Bert Bogaerts, Catherine Carrillo, Amrita Bharat, Kristy Horan, Norelle L. Sherry, Torsten Seemann, Benjamin P. Howden, Saskia Hiltemann, Leonid Chindelevitch, Andrew P. Stubbs, John P. Hays
Published 2025-01-01Get full text
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Parameters for one health genomic surveillance of Escherichia coli from Australia by Anne E. Watt, Max L. Cummins, Celeste M. Donato, Wytamma Wirth, Ashleigh F. Porter, Patiyan Andersson, Erica Donner, Australian Pathogen Genomics One Health Working Group, Amy V. Jennison, Torsten Seemann, Steven P. Djordjevic, Benjamin P. Howden
Published 2025-01-01Get full text
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Publisher Correction: Parameters for one health genomic surveillance of Escherichia coli from Australia by Anne E. Watt, Max L. Cummins, Celeste M. Donato, Wytamma Wirth, Ashleigh F. Porter, Patiyan Andersson, Erica Donner, Australian Pathogen Genomics One Health Working Group, Amy V. Jennison, Torsten Seemann, Steven P. Djordjevic, Benjamin P. Howden
Published 2025-04-01Get full text
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Molecular Epidemiology of SARS-CoV-2 in Bangladesh by Abu Sayeed Mohammad Mahmud, Patiyan Andersson, Dieter Bulach, Sebastian Duchene, Anders Goncalves da Silva, Chantel Lin, Torsten Seemann, Benjamin P. Howden, Timothy P. Stinear, Tarannum Taznin, Md. Ahashan Habib, Shahina Akter, Tanjina Akhtar Banu, Md. Murshed Hasan Sarkar, Barna Goswami, Iffat Jahan, Md. Salim Khan
Published 2025-04-01Get full text
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Effects of Decentralized Sequencing on National Listeria monocytogenes Genomic Surveillance, Australia, 2016–2023 by Patiyan Andersson, Sally Dougall, Karolina Mercoulia, Kristy A. Horan, Torsten Seemann, Jake A. Lacey, Tuyet Hoang, Lex E.X. Leong, David Speers, Louise Cooley, Karina Kennedy, Rob Baird, Rikki Graham, Qinning Wang, Avram Levy, Dimitrios Menouhos, Norelle L. Sherry, Susan A. Ballard, Vitali Sintchenko, Amy V. Jennison, Benjamin P. Howden
Published 2025-05-01Get full text
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