Protocol for identifying key genes using network-based approach as an alternative to differential expression analysis by Piyush Agrawal, Sridhar Hannenhalli

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A transcription-centric model of SNP-age interaction. by Kun Wang, Mahashweta Basu, Justin Malin, Sridhar Hannenhalli

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Molecular signatures bidirectionally link myocardial infarction and lung cancer by Dhruva Nandi, Rajiv Janardhanan, Sridhar Hannenhalli, Piyush Agrawal

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Predicting gene expression changes upon epigenomic drug treatment [version 3; peer review: 4 approved, 2 not approved] by Monjura Afrin Rumi, Vishaka Gopalan, Sridhar Hannenhalli, Piyush Agrawal

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Genetic and physiological activation of osmosensitive gene expression mimics transcriptional signatures of pathogen infection in C. elegans. by Anne-Katrin Rohlfing, Yana Miteva, Sridhar Hannenhalli, Todd Lamitina

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Characterizing the pan-cancer role of exosomal miRNAs in metastasis across cancers by Piyush Agrawal, Gulden Olgun, Arashdeep Singh, Vishaka Gopalan, Sridhar Hannenhalli

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A subset of Polycomb-targeted transcription factor genes become hypermethylated yet upregulated in colorectal cancer by Min-Kyeong Kwon, Goeun Park, Dayoung Go, Donghyun Park, Sridhar Hannenhalli, Sun Shim Choi

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Allele-specific enhancers mediate associations between LCAT and ABCA1 polymorphisms and HDL metabolism. by Alicia D Howard, Xiaochun Wang, Megana Prasad, Avinash Das Sahu, Radhouane Aniba, Michael Miller, Sridhar Hannenhalli, Yen-Pei Christy Chang

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Cross-species identification of PIP5K1-, splicing- and ubiquitin-related pathways as potential targets for RB1-deficient cells. by Andrey A Parkhitko, Arashdeep Singh, Sharon Hsieh, Yanhui Hu, Richard Binari, Christopher J Lord, Sridhar Hannenhalli, Colm J Ryan, Norbert Perrimon

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Genome‐wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy by Avinash Das Sahu, Joo S Lee, Zhiyong Wang, Gao Zhang, Ramiro Iglesias‐Bartolome, Tian Tian, Zhi Wei, Benchun Miao, Nishanth Ulhas Nair, Olga Ponomarova, Adam A Friedman, Arnaud Amzallag, Tabea Moll, Gyulnara Kasumova, Patricia Greninger, Regina K Egan, Leah J Damon, Dennie T Frederick, Livnat Jerby‐Arnon, Allon Wagner, Kuoyuan Cheng, Seung Gu Park, Welles Robinson, Kevin Gardner, Genevieve Boland, Sridhar Hannenhalli, Meenhard Herlyn, Cyril Benes, Keith Flaherty, Ji Luo, J Silvio Gutkind, Eytan Ruppin

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