Integrating information from historical data into mechanistic models for influenza forecasting. by Alessio Andronico, Juliette Paireau, Simon Cauchemez

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Estimating dengue transmission intensity from sero-prevalence surveys in multiple countries. by Natsuko Imai, Ilaria Dorigatti, Simon Cauchemez, Neil M Ferguson

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Estimating Dengue Transmission Intensity from Case-Notification Data from Multiple Countries. by Natsuko Imai, Ilaria Dorigatti, Simon Cauchemez, Neil M Ferguson

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Model-Based Comprehensive Analysis of School Closure Policies for Mitigating Influenza Epidemics and Pandemics. by Laura Fumanelli, Marco Ajelli, Stefano Merler, Neil M Ferguson, Simon Cauchemez

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Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data. by Thibaut Jombart, Anne Cori, Xavier Didelot, Simon Cauchemez, Christophe Fraser, Neil Ferguson

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Using routine surveillance data to estimate the epidemic potential of emerging zoonoses: application to the emergence of US swine origin influenza A H3N2v virus. by Simon Cauchemez, Scott Epperson, Matthew Biggerstaff, David Swerdlow, Lyn Finelli, Neil M Ferguson

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RSero: A user-friendly R package to reconstruct pathogen circulation history from seroprevalence studies. by Nathanaël Hozé, Margarita Pons-Salort, C Jessica E Metcalf, Michael White, Henrik Salje, Simon Cauchemez

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A Bayesian approach to quantifying the effects of mass poultry vaccination upon the spatial and temporal dynamics of H5N1 in Northern Vietnam. by Patrick G T Walker, Simon Cauchemez, Raphaëlle Métras, Do Huu Dung, Dirk Pfeiffer, Azra C Ghani

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Transmission characteristics of the 2009 H1N1 influenza pandemic: comparison of 8 Southern hemisphere countries. by Lulla Opatowski, Christophe Fraser, Jamie Griffin, Eric de Silva, Maria D Van Kerkhove, Emily J Lyons, Simon Cauchemez, Neil M Ferguson

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Individual Correlates of Infectivity of Influenza A Virus Infections in Households. by Tim K Tsang, Vicky J Fang, Kwok-Hung Chan, Dennis K M Ip, Gabriel M Leung, J S Malik Peiris, Benjamin J Cowling, Simon Cauchemez

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Influenza infection rates, measurement errors and the interpretation of paired serology. by Simon Cauchemez, Peter Horby, Annette Fox, Le Quynh Mai, Le Thi Thanh, Pham Quang Thai, Le Nguyen Minh Hoa, Nguyen Tran Hien, Neil M Ferguson

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Towards better targeting: lessons from a posthoneymoon measles outbreak in Madagascar, 2018–2019 by Jean-Michel Heraud, Simon Cauchemez, Antso Raherindrasana, C Jessica Metcalf, Amy Winter, Amy Wesolowski, Richter Razafindratsimandresy, Lea Randriamampionona, S A Rafalimanantsoa, Yolande Masembe, Charlotte Ndiaye, Julio Rakotonirina

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Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting. by Hervé Bourhy, Emmanuel Nakouné, Matthew Hall, Pierre Nouvellet, Anthony Lepelletier, Chiraz Talbi, Laurence Watier, Edward C Holmes, Simon Cauchemez, Philippe Lemey, Christl A Donnelly, Andrew Rambaut

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Rabies and canine distemper virus epidemics in the red fox population of northern Italy (2006-2010). by Pierre Nouvellet, Christl A Donnelly, Marco De Nardi, Chris J Rhodes, Paola De Benedictis, Carlo Citterio, Federica Obber, Monica Lorenzetto, Manuela Dalla Pozza, Simon Cauchemez, Giovanni Cattoli

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Best practices for estimating and reporting epidemiological delay distributions of infectious diseases. by Kelly Charniga, Sang Woo Park, Andrei R Akhmetzhanov, Anne Cori, Jonathan Dushoff, Sebastian Funk, Katelyn M Gostic, Natalie M Linton, Adrian Lison, Christopher E Overton, Juliet R C Pulliam, Thomas Ward, Simon Cauchemez, Sam Abbott

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Use of Viremia to Evaluate the Baseline Case Fatality Ratio of Ebola Virus Disease and Inform Treatment Studies: A Retrospective Cohort Study. by Oumar Faye, Alessio Andronico, Ousmane Faye, Henrik Salje, Pierre-Yves Boëlle, N'Faly Magassouba, Elhadj Ibrahima Bah, Lamine Koivogui, Boubacar Diallo, Alpha Amadou Diallo, Sakoba Keita, Mandy Kader Konde, Robert Fowler, Gamou Fall, Simon Cauchemez, Amadou Alpha Sall

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Factors associated with post-seasonal serological titer and risk factors for infection with the pandemic A/H1N1 virus in the French general population. by Nathanael Lapidus, Xavier de Lamballerie, Nicolas Salez, Michel Setbon, Rosemary M Delabre, Pascal Ferrari, Nanikaly Moyen, Marie-Lise Gougeon, Frédéric Vely, Marianne Leruez-Ville, Laurent Andreoletti, Simon Cauchemez, Pierre-Yves Boëlle, Eric Vivier, Laurent Abel, Michaël Schwarzinger, Michèle Legeas, Pierre Le Cann, Antoine Flahault, Fabrice Carrat

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Analytical framework to evaluate and optimize the use of imperfect diagnostics to inform outbreak response: Application to the 2017 plague epidemic in Madagascar. by Quirine Ten Bosch, Voahangy Andrianaivoarimanana, Beza Ramasindrazana, Guillain Mikaty, Rado J L Rakotonanahary, Birgit Nikolay, Soloandry Rahajandraibe, Maxence Feher, Quentin Grassin, Juliette Paireau, Soanandrasana Rahelinirina, Rindra Randremanana, Feno Rakotoarimanana, Marie Melocco, Voahangy Rasolofo, Javier Pizarro-Cerdá, Anne-Sophie Le Guern, Eric Bertherat, Maherisoa Ratsitorahina, André Spiegel, Laurence Baril, Minoarisoa Rajerison, Simon Cauchemez

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Why the growth of arboviral diseases necessitates a new generation of global risk maps and future projections. by Oliver J Brady, Leonardo S Bastos, Jamie M Caldwell, Simon Cauchemez, Hannah E Clapham, Illaria Dorigatti, Katy A M Gaythorpe, Wenbiao Hu, Laith Hussain-Alkhateeb, Michael A Johansson, Ahyoung Lim, Velma K Lopez, Richard James Maude, Jane P Messina, Erin A Mordecai, Andrew Townsend Peterson, Isabel Rodriquez-Barraquer, Ingrid B Rabe, Diana P Rojas, Sadie J Ryan, Henrik Salje, Jan C Semenza, Quan Minh Tran

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