Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study. by Oliver Ratmann, Gé Donker, Adam Meijer, Christophe Fraser, Katia Koelle

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Estimating fine age structure and time trends in human contact patterns from coarse contact data: The Bayesian rate consistency model. by Shozen Dan, Yu Chen, Yining Chen, Melodie Monod, Veronika K Jaeger, Samir Bhatt, André Karch, Oliver Ratmann, Machine Learning & Global Health network

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Addressing survey fatigue bias in longitudinal social contact studies to improve pandemic preparedness by Shozen Dan, Zhi Ling, Yu Chen, Joshua Tegegne, Veronika K. Jaeger, André Karch, Swapnil Mishra, Oliver Ratmann, The Machine Learning &Global Health network

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Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis. by Daniela Bezemer, Anne Cori, Oliver Ratmann, Ard van Sighem, Hillegonda S Hermanides, Bas E Dutilh, Luuk Gras, Nuno Rodrigues Faria, Rob van den Hengel, Ashley J Duits, Peter Reiss, Frank de Wolf, Christophe Fraser, ATHENA observational cohort

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The effectiveness of Hope Groups, a mental health, parenting support, and violence prevention program for families affected by the war in Ukraine: Findings from a pre-post study by Susan Hillis, Sydney Tucker, Nicole Baldonado, Evgenia Taradaika, Lyudmyla Bryn, Svitlana Kharchenko, Tetiana Machabelii, Roisin Taylor, Phil Green, Philip Goldman, Isang Awah, Joshua Baldonado, Praveen Gomez, Seth Flaxman, Oliver Ratmann, Jamie M. Lachman, Andres Villaveces, Lorraine Sherr, Lucie Cluver

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Quantifying prevalence and risk factors of HIV multiple infection in Uganda from population-based deep-sequence data. by Michael A Martin, Andrea Brizzi, Xiaoyue Xi, Ronald Moses Galiwango, Sikhulile Moyo, Deogratius Ssemwanga, Alexandra Blenkinsop, Andrew D Redd, Lucie Abeler-Dörner, Christophe Fraser, Steven J Reynolds, Thomas C Quinn, Joseph Kagaayi, David Bonsall, David Serwadda, Gertrude Nakigozi, Godfrey Kigozi, M Kate Grabowski, Oliver Ratmann, with the PANGEA-HIV Consortium and the Rakai Health Sciences Program

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HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data by Tanya Golubchik, Lucie Abeler-Dörner, Matthew Hall, Chris Wymant, David Bonsall, George Macintyre-Cockett, Laura Thomson, Jared M. Baeten, Connie L. Celum, Ronald M. Galiwango, Barry Kosloff, Mohammed Limbada, Andrew Mujugira, Nelly R. Mugo, Astrid Gall, François Blanquart, Margreet Bakker, Daniela Bezemer, Swee Hoe Ong, Jan Albert, Norbert Bannert, Jacques Fellay, Barbara Gunsenheimer-Bartmeyer, Huldrych F. Günthard, Pia Kivelä, Roger D. Kouyos, Laurence Meyer, Kholoud Porter, Ard van Sighem, Mark van der Valk, Ben Berkhout, Paul Kellam, Marion Cornelissen, Peter Reiss, Helen Ayles, David N. Burns, Sarah Fidler, Mary Kate Grabowski, Richard Hayes, Joshua T. Herbeck, Joseph Kagaayi, Pontiano Kaleebu, Jairam R. Lingappa, Deogratius Ssemwanga, Susan H. Eshleman, Myron S. Cohen, Oliver Ratmann, Oliver Laeyendecker, Christophe Fraser, the HPTN 071 (PopART) Phylogenetics protocol team, the BEEHIVE consortium and the PANGEA consortium

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