High quality transcriptome profiling confirms the transcriptional landscape of Treponema pallidum subsp. pallidum by Linda Grillová, Eli M. Carrami, William Roberts-Sengier, Nicholas R. Thomson

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Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences. by Grace A Blackwell, Martin Hunt, Kerri M Malone, Leandro Lima, Gal Horesh, Blaise T F Alako, Nicholas R Thomson, Zamin Iqbal

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High diversity of Escherichia coli causing invasive disease in neonates in Malawi poses challenges for O-antigen based vaccine approach by Oliver Pearse, Allan Zuza, Edith Tewesa, Patricia Siyabu, Alice J. Fraser, Jennifer Cornick, Kondwani Kawaza, Patrick Musicha, Nicholas R. Thomson, Nicholas A. Feasey, Eva Heinz

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Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing. by Marcelino Garrine, Inácio Mandomando, Delfino Vubil, Tacilta Nhampossa, Sozinho Acacio, Shan Li, Joseph N Paulson, Mathieu Almeida, Daryl Domman, Nicholas R Thomson, Pedro Alonso, Oscar Colin Stine

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Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis. by Kristine B Arnvig, Iñaki Comas, Nicholas R Thomson, Joanna Houghton, Helena I Boshoff, Nicholas J Croucher, Graham Rose, Timothy T Perkins, Julian Parkhill, Gordon Dougan, Douglas B Young

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Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice. by Olusegun Oshota, Max Conway, Maria Fookes, Fernanda Schreiber, Roy R Chaudhuri, Lu Yu, Fiona J E Morgan, Simon Clare, Jyoti Choudhary, Nicholas R Thomson, Pietro Lio, Duncan J Maskell, Pietro Mastroeni, Andrew J Grant

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A high‐resolution genomic analysis of multidrug‐resistant hospital outbreaks of Klebsiella pneumoniae by Hao Chung The, Abhilasha Karkey, Duy Pham Thanh, Christine J Boinett, Amy K Cain, Matthew Ellington, Kate S Baker, Sabina Dongol, Corinne Thompson, Simon R Harris, Thibaut Jombart, Tu Le Thi Phuong, Nhu Tran Do Hoang, Tuyen Ha Thanh, Shrijana Shretha, Suchita Joshi, Buddha Basnyat, Guy Thwaites, Nicholas R Thomson, Maia A Rabaa, Stephen Baker

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South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study. by Hao Chung The, Maia A Rabaa, Duy Pham Thanh, Niall De Lappe, Martin Cormican, Mary Valcanis, Benjamin P Howden, Sonam Wangchuk, Ladaporn Bodhidatta, Carl J Mason, To Nguyen Thi Nguyen, Duong Vu Thuy, Corinne N Thompson, Nguyen Phu Huong Lan, Phat Voong Vinh, Tuyen Ha Thanh, Paul Turner, Poda Sar, Guy Thwaites, Nicholas R Thomson, Kathryn E Holt, Stephen Baker

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Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042. by Roy R Chaudhuri, Mohammed Sebaihia, Jon L Hobman, Mark A Webber, Denisse L Leyton, Martin D Goldberg, Adam F Cunningham, Anthony Scott-Tucker, Paul R Ferguson, Christopher M Thomas, Gad Frankel, Christoph M Tang, Edward G Dudley, Ian S Roberts, David A Rasko, Mark J Pallen, Julian Parkhill, James P Nataro, Nicholas R Thomson, Ian R Henderson

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Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux. by Nicola K Petty, Theresa Feltwell, Derek Pickard, Simon Clare, Ana L Toribio, Maria Fookes, Kevin Roberts, Rita Monson, Satheesh Nair, Robert A Kingsley, Richard Bulgin, Siouxsie Wiles, David Goulding, Thomas Keane, Craig Corton, Nicola Lennard, David Harris, David Willey, Richard Rance, Lu Yu, Jyoti S Choudhary, Carol Churcher, Michael A Quail, Julian Parkhill, Gad Frankel, Gordon Dougan, George P C Salmond, Nicholas R Thomson

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Interplay between the gut microbiome and typhoid fever: insights from endemic countries and a controlled human infection model by Philip M. Ashton, Leonardos Mageiros, James E. Meiring, Angeziwa Chunga-Chirambo, Farhana Khanam, Sabina Dongol, Happy Banda, Abhilasha Karkey, Lorena Preciado-Llanes, Helena Thomaides-Brears, Malick Gibani, Nazmul Hasan Rajib, Nazia Rahman, Prasanta Kumar Biswas, Md Amirul Islam Bhuiyan, Sally Kay, Kate Auger, Olivier Seret, Nicholas R. Thomson, Andrew J. Pollard, Stephen Baker, Buddha Basnyat, John D. Clemens, Christiane Dolecek, Sarah J. Dunstan, Gordon Dougan, Robert S. Heyderman, Virginia E. Pitzer, Firdausi Qadri, Melita A. Gordon, Kathryn E. Holt, Thomas C. Darton, STRATAA Study Group

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