Differential network biology by Trey Ideker, Nevan J Krogan

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Mass spectrometry‐based protein–protein interaction networks for the study of human diseases by Alicia L Richards, Manon Eckhardt, Nevan J Krogan

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Functional maps of protein complexes from quantitative genetic interaction data. by Sourav Bandyopadhyay, Ryan Kelley, Nevan J Krogan, Trey Ideker

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Evolution and functional cross‐talk of protein post‐translational modifications by Pedro Beltrao, Peer Bork, Nevan J. Krogan, Vera van Noort

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Genome-wide association data reveal a global map of genetic interactions among protein complexes. by Gregory Hannum, Rohith Srivas, Aude Guénolé, Haico van Attikum, Nevan J Krogan, Richard M Karp, Trey Ideker

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Learning a prior on regulatory potential from eQTL data. by Su-In Lee, Aimée M Dudley, David Drubin, Pamela A Silver, Nevan J Krogan, Dana Pe'er, Daphne Koller

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Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast by Ronish Gupta, Bart Kus, Christopher Fladd, James Wasmuth, Raffi Tonikian, Sachdev Sidhu, Nevan J Krogan, John Parkinson, Daniela Rotin

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Epistatic relationships reveal the functional organization of yeast transcription factors by Jiashun Zheng, Joris J Benschop, Michael Shales, Patrick Kemmeren, Jack Greenblatt, Gerard Cagney, Frank Holstege, Hao Li, Nevan J Krogan

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Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes. by Jeffrey R Johnson, Silvia D Santos, Tasha Johnson, Ursula Pieper, Marta Strumillo, Omar Wagih, Andrej Sali, Nevan J Krogan, Pedro Beltrao

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Differential genetic interactions of yeast stress response MAPK pathways by Humberto Martin, Michael Shales, Pablo Fernandez‐Piñar, Ping Wei, Maria Molina, Dorothea Fiedler, Kevan M Shokat, Pedro Beltrao, Wendell Lim, Nevan J Krogan

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Cross‐species chemogenomic profiling reveals evolutionarily conserved drug mode of action by Laura Kapitzky, Pedro Beltrao, Theresa J Berens, Nadine Gassner, Chunshui Zhou, Arthur Wüster, Julie Wu, M Madan Babu, Stephen J Elledge, David Toczyski, R Scott Lokey, Nevan J Krogan

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An integrated proteomics approach identifies phosphorylation sites on viral and host proteins that regulate West Nile virus infection by Zachary Walter, Minghua Li, Melissa Molho, Lauren Berish, Andrew Isopi, Mary O’Mara, Mark Dittmar, Chike Nwaezeapu, Alicia Richards, Martin McCullagh, Nevan J. Krogan, Sara Cherry, Jeffrey R. Johnson, Holly Ramage

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Nuclear accumulation of host transcripts during Zika Virus Infection. by Kristoffer E Leon, Mir M Khalid, Ryan A Flynn, Krystal A Fontaine, Thong T Nguyen, G Renuka Kumar, Camille R Simoneau, Sakshi Tomar, David Jimenez-Morales, Mariah Dunlap, Julia Kaye, Priya S Shah, Steven Finkbeiner, Nevan J Krogan, Carolyn Bertozzi, Jan E Carette, Melanie Ott

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Host cell factors in HIV replication: meta-analysis of genome-wide studies. by Frederic D Bushman, Nirav Malani, Jason Fernandes, Iván D'Orso, Gerard Cagney, Tracy L Diamond, Honglin Zhou, Daria J Hazuda, Amy S Espeseth, Renate König, Sourav Bandyopadhyay, Trey Ideker, Stephen P Goff, Nevan J Krogan, Alan D Frankel, John A T Young, Sumit K Chanda

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SARS-CoV-2 evolution balances conflicting roles of N protein phosphorylation. by Abdullah M Syed, Alison Ciling, Irene P Chen, Christopher R Carlson, Armin N Adly, Hannah S Martin, Taha Y Taha, Mir M Khalid, Nathan Price, Mehdi Bouhaddou, Manisha R Ummadi, Jack M Moen, Nevan J Krogan, David O Morgan, Melanie Ott, Jennifer A Doudna

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Enhanced RNA replication and pathogenesis in recent SARS-CoV-2 variants harboring the L260F mutation in NSP6. by Taha Y Taha, Shahrzad Ezzatpour, Jennifer M Hayashi, Chengjin Ye, Francisco J Zapatero-Belinchón, Julia A Rosecrans, Gabriella R Kimmerly, Irene P Chen, Keith Walcott, Anna Kurianowicz, Danielle M Jorgens, Natalie R Chaplin, Annette Choi, David W Buchholz, Julie Sahler, Zachary T Hilt, Brian Imbiakha, Cecilia Vagi-Szmola, Mauricio Montano, Erica Stevenson, Martin Gordon, Danielle L Swaney, Nevan J Krogan, Gary R Whittaker, Luis Martinez-Sobrido, Hector C Aguilar, Melanie Ott

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