Genome-wide analysis reveals loci encoding anti-macrophage factors in the human pathogen Burkholderia pseudomallei K96243. by Andrea J Dowling, Paul A Wilkinson, Matthew T G Holden, Michael A Quail, Stephen D Bentley, Julia Reger, Nicholas R Waterfield, Richard W Titball, Richard H Ffrench-Constant

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Superantigenic activity of emm3 Streptococcus pyogenes is abrogated by a conserved, naturally occurring smeZ mutation. by Claire E Turner, Mary Sommerlad, Karen McGregor, Frances J Davies, Bruno Pichon, Deborah L W Chong, Leili Farzaneh, Matthew T G Holden, Brian G Spratt, Androulla Efstratiou, Shiranee Sriskandan

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Evaluation of risk-based travel policy for the COVID-19 epidemic in Scotland: a population-based surveillance study by Jennifer Bishop, David L Robertson, Alison Smith-Palmer, Samantha Lycett, Matthew T G Holden, Gonzalo Yebra, Christopher Redman, Joseph Hughes, Kirstin Leslie, Isobel McLachlan, Selene Huntley, Sharif Shaaban, Nicolaos Christofidis, Sema Nickbakhsh

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Practices and motives behind antibiotics provision in drug outlets in Tanzania: A qualitative study. by Pendo M Ndaki, Joseph R Mwanga, Martha F Mushi, Eveline T Konje, Kathryn Jean Fredricks, Mike Kesby, Alison Sandeman, Stella Mugassa, Msilikale W Manyiri, Olga Loza, Katherine Keenan, Stanley M Mwita, Matthew T G Holden, Stephen E Mshana

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Whole genome sequencing identifies zoonotic transmission of MRSA isolates with the novel mecA homologue mecC by Ewan M. Harrison, Gavin K. Paterson, Matthew T.G. Holden, Jesper Larsen, Marc Stegger, Anders Rhod Larsen, Andreas Petersen, Robert L. Skov, Judit Marta Christensen, Anne Bak Zeuthen, Ole Heltberg, Simon R. Harris, Ruth N. Zadoks, Julian Parkhill, Sharon J. Peacock, Mark A. Holmes

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A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species. by Siriphan Boonsilp, Janjira Thaipadungpanit, Premjit Amornchai, Vanaporn Wuthiekanun, Mark S Bailey, Matthew T G Holden, Cuicai Zhang, Xiugao Jiang, Nobuo Koizumi, Kyle Taylor, Renee Galloway, Alex R Hoffmaster, Scott Craig, Lee D Smythe, Rudy A Hartskeerl, Nicholas P Day, Narisara Chantratita, Edward J Feil, David M Aanensen, Brian G Spratt, Sharon J Peacock

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Treatment seeking behaviours, antibiotic use and relationships to multi-drug resistance: A study of urinary tract infection patients in Kenya, Tanzania and Uganda. by Keina Sado, Katherine Keenan, Areti Manataki, Mike Kesby, Martha F Mushi, Stephen E Mshana, Joseph R Mwanga, Stella Neema, Benon Asiimwe, Joel Bazira, John Kiiru, Dominique L Green, Xuejia Ke, Antonio Maldonado-Barragán, Mary Abed Al Ahad, Kathryn J Fredricks, Stephen H Gillespie, Wilber Sabiiti, Blandina T Mmbaga, Gibson Kibiki, David Aanensen, V Anne Smith, Alison Sandeman, Derek J Sloan, Matthew T G Holden, HATUA Consortium

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Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens. by Matthew T G Holden, Zoe Heather, Romain Paillot, Karen F Steward, Katy Webb, Fern Ainslie, Thibaud Jourdan, Nathalie C Bason, Nancy E Holroyd, Karen Mungall, Michael A Quail, Mandy Sanders, Mark Simmonds, David Willey, Karen Brooks, David M Aanensen, Brian G Spratt, Keith A Jolley, Martin C J Maiden, Michael Kehoe, Neil Chanter, Stephen D Bentley, Carl Robinson, Duncan J Maskell, Julian Parkhill, Andrew S Waller

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Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. by Matthew T G Holden, Heidi Hauser, Mandy Sanders, Thi Hoa Ngo, Inna Cherevach, Ann Cronin, Ian Goodhead, Karen Mungall, Michael A Quail, Claire Price, Ester Rabbinowitsch, Sarah Sharp, Nicholas J Croucher, Tran Bich Chieu, Nguyen Thi Hoang Mai, To Song Diep, Nguyen Tran Chinh, Michael Kehoe, James A Leigh, Philip N Ward, Christopher G Dowson, Adrian M Whatmore, Neil Chanter, Pernille Iversen, Marcelo Gottschalk, Josh D Slater, Hilde E Smith, Brian G Spratt, Jianguo Xu, Changyun Ye, Stephen Bentley, Barclay G Barrell, Constance Schultsz, Duncan J Maskell, Julian Parkhill

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The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis. by David J Pascall, Elen Vink, Rachel Blacow, Naomi Bulteel, Alasdair Campbell, Robyn Campbell, Sarah Clifford, Chris Davis, Ana da Silva Filipe, Noha El Sakka, Ludmila Fjodorova, Ruth Forrest, Emily Goldstein, Rory Gunson, John Haughney, Matthew T G Holden, Patrick Honour, Joseph Hughes, Edward James, Tim Lewis, Samantha Lycett, Oscar MacLean, Martin McHugh, Guy Mollett, Yusuke Onishi, Ben Parcell, Surajit Ray, David L Robertson, Sharif Shabaan, James G Shepherd, Katherine Smollett, Kate Templeton, Elizabeth Wastnedge, Craig Wilkie, Thomas Williams, Emma C Thomson, COVID-19 Genomics UK (COG-UK) Consortium

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