Decoding bacterial methylomes in four public health-relevant microbial species: nanopore sequencing enables reproducible analysis of DNA modifications by Valentina Galeone, Johanna Dabernig-Heinz, Mara Lohde, Christian Brandt, Christian Kohler, Gabriel E. Wagner, Martin Hölzer

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VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models. by Guillermo Rangel-Pineros, Alexandre Almeida, Martin Beracochea, Ekaterina Sakharova, Manja Marz, Alejandro Reyes Muñoz, Martin Hölzer, Robert D Finn

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Detection and functional resolution of soluble immune complexes by an FcγR reporter cell panel by Haizhang Chen, Andrea Maul‐Pavicic, Martin Holzer, Magdalena Huber, Ulrich Salzer, Nina Chevalier, Reinhard E Voll, Hartmut Hengel, Philipp Kolb

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In silico genomic surveillance by CoVerage predicts and characterizes SARS-CoV-2 variants of interest by Katrina Norwood, Zhi-Luo Deng, Susanne Reimering, Gary Robertson, Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Martin Hölzer, Frank Klawonn, Alice C. McHardy

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Neighbourhood watch: genomic epidemiology of SARS-CoV-2 variants circulating in a German federal state, Mecklenburg-Western Pomerania, in 2020–2022 by Christian Kohler, Jacqueline King, Lina Stacker, Katja V. Goller, Juliane Moritz, Anne Pohlmann, Neetika Nath, Ana Tzvetkova, Maximilian Rieck, Sofia Paraskevopoulou, Denis Beslic, Martin Hölzer, Stephan Fuchs, Janine Ziemann, Lars Kaderali, Martin Beer, Nils-Olaf Hübner, Karsten Becker

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varVAMP: degenerate primer design for tiled full genome sequencing and qPCR by Jonas Fuchs, Johanna Kleine, Mathias Schemmerer, Julian Kreibich, Wolfgang Maier, Namuun Battur, Thomas Krannich, Somayyeh Sedaghatjoo, Lena Jaki, Anastasija Maks, Christina Boehm, Carina Wilhelm, Jessica Schulze, Christin Mache, Elischa Berger, Jessica Panajotov, Lisa Arnold, Björn Grüning, Markus Bauswein, Sindy Böttcher, Reimar Johne, Jürgen Wenzel, Martin Hölzer, Marcus Panning

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Leveraging wastewater sequencing to strengthen global public health surveillance by Victor Gordeev, Martin Hölzer, Daniel Desirò, Iryna V. Goraichuk, Sergey Knyazev, Helena Solo-Gabriele, Pavel Skums, Smruthi Karthikeyan, Alexandria Evans, Shelesh Agrawal, Alexander G. Lucaci, Christopher E. Mason, Justin M. Su, Cynthia Gibas, Niranjan Nagarajan, Rafael Peres da Silva, Nicolae Drabcinski, Viorel Munteanu, Lingyu Zhan, Julia Rubin, Nicholas C. Wu, Andrew Trister, Dumitru Ciorba, Viorel Bostan, Andrei Lobiuc, Mihai Covasa, Roel A. Ophoff, Alex Zelikovsky, Mihai Dimian, Serghei Mangul

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