4CMenB vaccine coverage of invasive serogroup B meningococci collected in Belgium between 2016 and 2022 by Nathalie Goeders, Kevin Vanneste, Nancy H.C. Roosens, Bert Bogaerts, Wesley Mattheus

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Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication. by Karin Voordeckers, Chris A Brown, Kevin Vanneste, Elisa van der Zande, Arnout Voet, Steven Maere, Kevin J Verstrepen

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Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products by Jolien D’aes, Marie-Alice Fraiture, Bert Bogaerts, Yari Van Laere, Sigrid C.J. De Keersmaecker, Nancy H.C. Roosens, Kevin Vanneste

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Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches by Yari Van Laere, Yari Van Laere, Marie-Alice Fraiture, Andrea Gobbo, Sigrid C. J. De Keersmaecker, Kathleen Marchal, Kathleen Marchal, Nancy H. C. Roosens, Kevin Vanneste

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Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with differe... by Raf Winand, Elizabet D’hooge, Alexander Van Uffelen, Bert Bogaerts, Julien Van Braekel, Stefan Hoffman, Nancy H. C. J. Roosens, Pierre Becker, Sigrid C. J. De Keersmaecker, Kevin Vanneste

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Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing: a case study on fluoroquinolone resistance by Bram Bloemen, Bram Bloemen, Mathieu Gand, Moniek Ringenier, Bert Bogaerts, Kevin Vanneste, Kathleen Marchal, Kathleen Marchal, Nancy H. C. Roosens, Jeroen Dewulf, Filip Boyen, Sigrid C. J. De Keersmaecker

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Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection by Bert Bogaerts, Julien Van Braekel, Alexander Van Uffelen, Jolien D’aes, Maxime Godfroid, Thomas Delcourt, Michael Kelchtermans, Kato Milis, Nathalie Goeders, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Raf Winand, Kevin Vanneste

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BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows by Nikolaos Strepis, Dennis Dollee, Donny Vrins, Kevin Vanneste, Bert Bogaerts, Catherine Carrillo, Amrita Bharat, Kristy Horan, Norelle L. Sherry, Torsten Seemann, Benjamin P. Howden, Saskia Hiltemann, Leonid Chindelevitch, Andrew P. Stubbs, John P. Hays

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