coiaf: Directly estimating complexity of infection with allele frequencies. by Aris Paschalidis, Oliver J Watson, Ozkan Aydemir, Robert Verity, Jeffrey A Bailey

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Highly multiplexed molecular inversion probe panel in Plasmodium falciparum targeting common SNPs approximates whole-genome sequencing assessments for selection and relatedness by Karamoko Niaré, Karamoko Niaré, Rebecca Crudale, Abebe A. Fola, Abebe A. Fola, Neeva Wernsman Young, Victor Asua, Victor Asua, Melissa D. Conrad, Pierre Gashema, Anita Ghansah, Stan Hangi, Deus S. Ishengoma, Deus S. Ishengoma, Jean-Baptiste Mazarati, Ayalew Jejaw Zeleke, Philip J. Rosenthal, Abdoulaye A. Djimdé, Abdoulaye A. Djimdé, Jonathan J. Juliano, Jonathan J. Juliano, Jonathan J. Juliano, Jeffrey A. Bailey, Jeffrey A. Bailey

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Emergence of urban malaria and the associated risk factors: a case–control study in Mutare city, Zimbabwe by Sungano Mharakurwa, Natasha Mbwana, Trish Mharakurwa, Thelma Karumbidza, Vuyisile Mathe, Punha Fusire, Andrew Tangwena, Wilson Chauke, Munyaradzi Mukuzunga, Patience Dhliwayo, Shungu Mtero Munyati, Lovemore Gwanzura, Jeffrey A. Bailey, William J. Moss

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Spatial and epidemiological drivers of Plasmodium falciparum malaria among adults in the Democratic Republic of the Congo by Steven R Meshnick, Molly Deutsch-Feldman, Nicholas F Brazeau, Kyaw L Thwai, Jeremie Muwonga, Melchior Kashamuka, Antoinette Tshefu Kitoto, Ozkan Aydemir, Jeffrey A Bailey, Jessie K Edwards, Robert Verity, Emily W Gower

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Changes in susceptibility of Plasmodium falciparum to antimalarial drugs in Uganda over time: 2019–2024 by Martin Okitwi, Stephen Orena, Patrick K. Tumwebaze, Thomas Katairo, Yoweri Taremwa, Oswald Byaruhanga, Stephen Tukwasibwe, Samuel L. Nsobya, Jennifer Legac, Jeffrey A. Bailey, Roland A. Cooper, Melissa D. Conrad, Philip J. Rosenthal

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High-throughput genotyping of Plasmodium vivax in the Peruvian Amazon via molecular inversion probes by Zachary R. Popkin-Hall, Karamoko Niaré, Rebecca Crudale, Alfred Simkin, Abebe A. Fola, Juan F. Sanchez, Danielle L. Pannebaker, David J. Giesbrecht, Isaac E. Kim, Özkan Aydemir, Jeffrey A. Bailey, Hugo O. Valdivia, Jonathan J. Juliano

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Comparison of nanopore with illumina whole genome assemblies of the Epstein-Barr virus in Burkitt lymphoma by Isaac E. Kim, Abebe A. Fola, Enrique Puig, Titus Kipkemboi Maina, Sin Ting Hui, Hongyu Ma, Kaleb Zuckerman, Eddy O. Agwati, Alec Leonetti, Rebecca Crudale, Micah A. Luftig, Ann M. Moormann, Cliff Oduor, Jeffrey A. Bailey

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Rising prevalence of Plasmodium falciparum Artemisinin partial resistance mutations in Ethiopia by Bokretsion G. Brhane, Abebe A. Fola, Helen Nigussie, Alec Leonetti, Moges Kassa, Henok Hailgiorgis, Yonas Wuletaw, Adugna Abera, Hussein Mohammed, Heven Sime, Abeba G/Tsadik, Gudissa Assefa, Hiwot Solomon, Geremew Tasew, Getachew Tollera, Mesay Hailu, Jonathan J. Juliano, Ashenafi Assefa, Jonathan B. Parr, Jeffrey A. Bailey

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Performance of molecular inversion probe DR23K and Paragon MAD4HatTeR Amplicon sequencing panels for detection of Plasmodium falciparum mutations associated with antimalarial drug... by Thomas Katairo, Victor Asua, Bienvenu Nsengimaana, Stephen Tukwasibwe, Francis D. Semakuba, Innocent Wiringilimaana, Brian A. Kagurusi, Caroline Mwubaha, Jackie Nakasaanya, Shreeya Garg, Shahiid Kiyaga, Monica Mbabazi, Kisakye D. Kabbale, Alisen Ayitewala, Samuel L. Nsobya, Moses R. Kamya, Isaac Ssewanyana, Jeffrey A. Bailey, Andrés Aranda-Díaz, Philip J. Rosenthal, Bryan Greenhouse, Jessica Briggs, Melissa D. Conrad

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Prevalence of subpatent Plasmodium falciparum infections in regions with varying transmission intensities and implications for malaria elimination in Mainland Tanzania by Misago D. Seth, Zachary R. Popkin-Hall, Rashid A. Madebe, Rule Budodo, Catherine Bakari, Beatus M. Lyimo, David Giesbrecht, Ramadhani Moshi, Ruth B. Mbwambo, Filbert Francis, Dativa Pereus, Doris Mbata, Daniel P. Challe, Salehe S. Mandai, Gervas A. Chacha, Angelina J. Kisambale, Daniel Mbwambo, Sijenunu Aaron, Abdallah Lusasi, Samwel Lazaro, Celine I. Mandara, Jeffrey A. Bailey, Jonathan J. Juliano, Julie R. Gutman, Deus S. Ishengoma

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Regulatory challenges in conducting human subjects research in emergency settings: the National Trauma Research Action Plan (NTRAP) scoping review by Deborah M Stein, Eileen M Bulger, Michelle A Price, Adil H Haider, Cynthia Lizette Villarreal, Karen J Brasel, Todd W Costantini, Jeffrey A Bailey, Jonathan I Groner, Zara R Cooper, Juan Pablo Herrera-Escobar, Pamela J Bixby, Maxwell Braverman, James R Ficke, Nicole S Gibran, Ashley N Moreno, Alfonso Zenteno, Christine Saenz, Alexander Toppo, Carrie A Sims, Bellal A Joseph, Craig D Newgard

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Assessment of ex vivo antimalarial drug efficacy in African Plasmodium falciparum parasite isolates, 2016–2023: a genotype–phenotype association studyResearch in context by Jason Rosado, Abebe A. Fola, Sandrine Cojean, Véronique Sarrasin, Romain Coppée, Justine Bailly, Rizwana Zaffaroulah, Azza Bouzayene, Liliane Cicéron, Ludivine Houzé, Rebecca Crudale, Lise Musset, Marc Thellier, Bruno Pradines, Jérôme Clain, Jeffrey A. Bailey, Sandrine Houzé, Ahmed Aboubacar, Patrice Agnamey, Abou-Bacar Ahmed, Daniel Ajzenberg, Adela Angoulvant, Frédéric Ariey, Benjamin Aubry, Firouze Banisadr, Sorya Belaz, Ghania Belkadi, Ghania Belkacem Belkadi, Anne Pauline Bellanger, Dieudonné Bemba, Farida Benaoudia, Martine Bloch, Francoise Botterel, Vincent Bouden, Marie-Elisabeth Bougnoux, Caren Brump, Sophie Brun, Julie Brunet, Bernadette Buret, Pauline Caraux-Paz, Nourrisson Celine, Sylvain Clauser, Elodie Collin, Naima Dahane, Céline Damiani, Eric Dannaoui, Céline Dard, Marie-Laure Darde, Anne Debourgogne, Thierry Delacour, Jean-Marie Delarbre, Anne Delaval, Veronique Delcey, Anne-Sophie Deleplancque, Guillaume Desoubeaux, Nathalie Desuremain, Gisele Dewulf, Rémy Durand, Marie-Fleur Durieux, Emmanuel Dutoit, Odile Eloy, Jean-François Faucher, Loïc Favennec, Albert Faye, Odile Fenneteau, Cécile Ficko, Emilie Frealle, Gilles Gargala, Céline Garnaud, Ludovic De Gentile, Nadine Godineau, Judith Gorlicki, Yohann Le Govic, Alain Gravet, Nadia Guennouni, Samia Hamane, Thomas Hanslik, Antoine Huguenin, Jean-Pierre Hurst, Fakhri Jeddi, Leroy Jordan, Luce Landraud, Hélène Lapillonne, Sébastien Larréché, Rose-Anne Lavergne, Jean Philippe Lemoine, Cécile Leprince, Elodie Lesteven, Angèle Li, Caroline Lohmann, Basmaciyan Louise, Marie-Claire Machouart, Céline Malassigne, Anthony Marteau, Danièle Maubon, Edith Mazars, Bruno Megarbane, Ana Mendes-Moreira, Sylvain Mermond, Gwénaël Le Moal, Alicia Moreno, Pierre Mornand, Jean-Benjamin Murat, René Nabias, Jerome Naudin, Gilles Nevez, Céline Nourrisson, Mouri Oussama, Nathalie Parez, Olivier Patey, Pierre Patoz, Gauthier Pean-De-Ponfilly, Jean Yves Peltier, Pascale Penn, Alice Perignon, Estelle Perraud-Cateau, Alexander Pfaff, Sorya Belaz, Marc Pihet, Jean-Etienne Pilo, Isabelle Poilane, Philippe Poirier, Didier Poisson, Denis Pons, Lauren Pull, Dorothée Quinio, Didier Raffenot, Matthieu Revest, Gladys Robert, Olivier Rogeaux, Gabrielle Roosen, Milène Sasso, Françoise Schmitt, Boualem Sendid, Yaye Senghor, Muriel Silva, Jean-Yves Siriez, Emilie Sitterlé, Frédéric Sorge, Maurellet Evrard Sylvie, Ilhame Tantaoui, Dominique Toubas, Ali Cherif Touil, Céline Tournus, Hélène Yera

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