Fine-tuning protein language models to understand the functional impact of missense variants by Ali Saadat, Jacques Fellay

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Proteome-wide prediction of the mode of inheritance and molecular mechanisms underlying genetic diseases using structural interactomics by Ali Saadat, Jacques Fellay

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Prevalence of actionable pharmacogenetic variants and high‐risk drug prescriptions: A Swiss hospital‐based cohort study by Flavia Hodel, Maria B. De Min, Christian Wandall Thorball, Claire Redin, Peter Vollenweider, François Girardin, Jacques Fellay

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Role of APOBEC3F Gene Variation in HIV-1 Disease Progression and Pneumocystis Pneumonia. by Ping An, Sudhir Penugonda, Christian W Thorball, Istvan Bartha, James J Goedert, Sharyne Donfield, Susan Buchbinder, Elizabeth Binns-Roemer, Gregory D Kirk, Wenyan Zhang, Jacques Fellay, Xiao-Fang Yu, Cheryl A Winkler

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Genome-to-genome analysis reveals associations between human and mycobacterial genetic variation in tuberculosis patients from Tanzania by Zhi Ming Xu, Michaela Zwyer, Hellen Hiza, Sarah Schmidiger, Mohamed Sasamalo, Miriam Reinhard, Anna Doetsch, Sonia Borrell, Olivier Naret, Sina Rüeger, Dylan Lawless, Simon Tang, Faima Isihaka, Hosiana Temba, Thomas Maroa, Rastard Naftari, Christian Beisel, Jerry Hella, Klaus Reither, Daniela Brites, Damien Portevin, Sebastien Gagneux, Jacques Fellay

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Copy number variation of KIR genes influences HIV-1 control. by Kimberly Pelak, Anna C Need, Jacques Fellay, Kevin V Shianna, Sheng Feng, Thomas J Urban, Dongliang Ge, Andrea De Luca, Javier Martinez-Picado, Steven M Wolinsky, Jeremy J Martinson, Beth D Jamieson, Jay H Bream, Maureen P Martin, Persephone Borrow, Norman L Letvin, Andrew J McMichael, Barton F Haynes, Amalio Telenti, Mary Carrington, David B Goldstein, Galit Alter, NIAID Center for HIV/AIDS Vaccine Immunology

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LILRB2 interaction with HLA class I correlates with control of HIV-1 infection. by Arman A Bashirova, Enrique Martin-Gayo, Des C Jones, Ying Qi, Richard Apps, Xiaojiang Gao, Patrick S Burke, Craig J Taylor, Jerome Rogich, Steven Wolinsky, Jay H Bream, Priya Duggal, Shehnaz Hussain, Jeremy Martinson, Amy Weintrob, Gregory D Kirk, Jacques Fellay, Susan P Buchbinder, James J Goedert, Steven G Deeks, Florencia Pereyra, John Trowsdale, Mathias Lichterfeld, Amalio Telenti, Bruce D Walker, Rachel L Allen, Mary Carrington, Xu G Yu

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Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe. by François Blanquart, Chris Wymant, Marion Cornelissen, Astrid Gall, Margreet Bakker, Daniela Bezemer, Matthew Hall, Mariska Hillebregt, Swee Hoe Ong, Jan Albert, Norbert Bannert, Jacques Fellay, Katrien Fransen, Annabelle J Gourlay, M Kate Grabowski, Barbara Gunsenheimer-Bartmeyer, Huldrych F Günthard, Pia Kivelä, Roger Kouyos, Oliver Laeyendecker, Kirsi Liitsola, Laurence Meyer, Kholoud Porter, Matti Ristola, Ard van Sighem, Guido Vanham, Ben Berkhout, Paul Kellam, Peter Reiss, Christophe Fraser, BEEHIVE collaboration

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Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe. by François Blanquart, Chris Wymant, Marion Cornelissen, Astrid Gall, Margreet Bakker, Daniela Bezemer, Matthew Hall, Mariska Hillebregt, Swee Hoe Ong, Jan Albert, Norbert Bannert, Jacques Fellay, Katrien Fransen, Annabelle J Gourlay, M Kate Grabowski, Barbara Gunsenheimer-Bartmeyer, Huldrych F Günthard, Pia Kivelä, Roger Kouyos, Oliver Laeyendecker, Kirsi Liitsola, Laurence Meyer, Kholoud Porter, Matti Ristola, Ard van Sighem, Guido Vanham, Ben Berkhout, Paul Kellam, Peter Reiss, Christophe Fraser, BEEHIVE collaboration

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Common genetic variation and the control of HIV-1 in humans. by Jacques Fellay, Dongliang Ge, Kevin V Shianna, Sara Colombo, Bruno Ledergerber, Elizabeth T Cirulli, Thomas J Urban, Kunlin Zhang, Curtis E Gumbs, Jason P Smith, Antonella Castagna, Alessandro Cozzi-Lepri, Andrea De Luca, Philippa Easterbrook, Huldrych F Günthard, Simon Mallal, Cristina Mussini, Judith Dalmau, Javier Martinez-Picado, José M Miro, Niels Obel, Steven M Wolinsky, Jeremy J Martinson, Roger Detels, Joseph B Margolick, Lisa P Jacobson, Patrick Descombes, Stylianos E Antonarakis, Jacques S Beckmann, Stephen J O'Brien, Norman L Letvin, Andrew J McMichael, Barton F Haynes, Mary Carrington, Sheng Feng, Amalio Telenti, David B Goldstein, NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI)

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HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data by Tanya Golubchik, Lucie Abeler-Dörner, Matthew Hall, Chris Wymant, David Bonsall, George Macintyre-Cockett, Laura Thomson, Jared M. Baeten, Connie L. Celum, Ronald M. Galiwango, Barry Kosloff, Mohammed Limbada, Andrew Mujugira, Nelly R. Mugo, Astrid Gall, François Blanquart, Margreet Bakker, Daniela Bezemer, Swee Hoe Ong, Jan Albert, Norbert Bannert, Jacques Fellay, Barbara Gunsenheimer-Bartmeyer, Huldrych F. Günthard, Pia Kivelä, Roger D. Kouyos, Laurence Meyer, Kholoud Porter, Ard van Sighem, Mark van der Valk, Ben Berkhout, Paul Kellam, Marion Cornelissen, Peter Reiss, Helen Ayles, David N. Burns, Sarah Fidler, Mary Kate Grabowski, Richard Hayes, Joshua T. Herbeck, Joseph Kagaayi, Pontiano Kaleebu, Jairam R. Lingappa, Deogratius Ssemwanga, Susan H. Eshleman, Myron S. Cohen, Oliver Ratmann, Oliver Laeyendecker, Christophe Fraser, the HPTN 071 (PopART) Phylogenetics protocol team, the BEEHIVE consortium and the PANGEA consortium

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Paediatric Personalized Research Network Switzerland (SwissPedHealth): a joint paediatric national data stream by Julia A Bielicki, Luregn J Schlapbach, Klara Posfay-Barbe, Sven Schulzke, Martin Stocker, Anita Rauch, Christopher B Forrest, Effy Vayena, Claudia E Kuehni, Jacques Fellay, Philipp Latzin, Christian Kahlert, Seraina Prader, Ben D Spycher, Katrin Männik, Jana Pachlopnik Schmid, Klara M Posfay-Barbe, Roger Lauener, Keith Harshman, Kelly Ormond, Manon Jaboyedoff, Eric Giannoni, Tatjana Welzel, Dylan Lawless, Rebeca Mozun, Fabiën N Belle, Andrea Agostini, Matthias R Baumgartner, D Sean Froese, Sandra Goetze, Kathrin Hofmann, Aurélie Martin Necker, Patrick G A Pedrioli, Sven M Schulzke, Nicola Zamboni, Julia E Vogt, Audrey van Drogen, Aurélie Martin Necker, Cornelia Hagman, D Sean Froese, Daphné Chopard, Eirini I Petrou, Emanuele Palumbo, Ioannis Xenarios, Jana Pachlopnik Schmid, Léa Ho Dac, Lorenz M Leuenberger, Mariam Ait Oumelloul, Nicole Goebel, Simon Boutry, Thomas M Sutter, Varvara Dimopoulou, Vito RT Zanotelli, Xeni Deligianni, Xenia Bovermann, Yara Shoman, Anna Hartung

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