Alignment-free viral sequence classification at scale by Daniel J. van Zyl, Marcel Dunaiski, Houriiyah Tegally, Cheryl Baxter, Tulio de Oliveira, Joicymara S. Xavier, The INFORM Africa research study group

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Conserved recombination patterns across hepatitis B genotypes: a retrospective study by Derek Tshiabuila, James E. San, Eduan Wilkinson, Graeme Dor, Houriiyah Tegally, Tongai G. Maponga, Marion Delphin, Philippa C. Matthews, Darren P. Martin, Cheryl Baxter, Tulio de Oliveira

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GRAPEVNE - Graphical Analytical Pipeline Development Environment for Infectious Diseases [version 1; peer review: 2 approved] by Samir Bhatt, John-Stuart Brittain, Houriiyah Tegally, Rhys Inward, Joseph Tsui, Gaspary Mwanyika, Bernardo Gutierrez, Sofonias Kifle Tessema, Tuyen Huynh, Abhishek Dasgupta, John T. McCrone, George Githinji, Moritz U.G. Kraemer, Stephen Ratcliffe

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"The COVID-19 pandemic in BRICS: Milestones, interventions, and molecular epidemiology". by Stephanie van Wyk, Monika Moir, Anindita Banerjee, Georgii A Bazykin, Nidhan K Biswas, Nikita Sitharam, Saumitra Das, Wentai Ma, Arindam Maitra, Anup Mazumder, Wasim Abdool Karim, Alessandra Pavan Lamarca, Mingkun Li, Elena Nabieva, Houriiyah Tegally, James Emmanuel San, Ana Tereza R Vasconcelos, Joicymara S Xavier, Eduan Wilkinson, Tulio de Oliveira

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Genomic Characterization of Circulating Dengue Virus, Ethiopia, 2022–2023 by Adugna Abera, Houriiyah Tegally, Geremew Tasew, Eduan Wilkinson, Abraham Ali, Feyisa Regasa, Molalegne Bitew, Mahlet Belachew, Lucious Chabuka, Gaspary Mwanyika, Derek Tshiabuila, Jennifer Giandhari, Sureshnee Pillay, Jenicca Poogavanan, Monika Moir, Moritz U.G. Kraemer, Kamran Khan, Carmen Huber, Getachew Tollera, Tobias F. Rinke de Wit, Cheryl Baxter, Richard Lessells, Dawit Wolday, Dereje Beyene, Tulio de Oliveira

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Integrated analyses of the transmission history of SARS-CoV-2 and its association with molecular evolution of the virus underlining the pandemic outbreaks in Italy, 2019-2023 by Eleonora Cella, Vagner Fonseca, Francesco Branda, Stephane Tosta, Keldenn Moreno, Gabriel Schuab, Sobur Ali, Svetoslav Nanev Slavov, Fabio Scarpa, Luciane Amorim Santos, Simone Kashima, Eduan Wilkinson, Houriiyah Tegally, Carla Mavian, Alessandra Borsetti, Francesca Caccuri, Marco Salemi, Tulio de Oliveira, Taj Azarian, Ana Maria Bispo de Filippis, Luiz Carlos Junior Alcantara, Giancarlo Ceccarelli, Arnaldo Caruso, Vittorio Colizzi, Alessandro Marcello, José Lourenço, Massimo Ciccozzi, Marta Giovanetti

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Tracing the spatial origins and spread of SARS-CoV-2 Omicron lineages in South Africa by Graeme Dor, Eduan Wilkinson, Darren P. Martin, Monika Moir, Derek Tshiabuila, Dikeledi Kekana, Buhle Ntozini, Rageema Joseph, Arash Iranzadeh, Martin M. Nyaga, Dominique Goedhals, Tongai Maponga, Jean Maritz, Oluwakemi Laguda-Akingba, Yajna Ramphal, Caitlin MacIntyre, Lucious Chabuka, Sureshnee Pillay, Jennifer Giandhari, Cheryl Baxter, Nei-yuan Hsiao, Wolfgang Preiser, Jinal N. Bhiman, Mary-Anne Davies, Marietjie Venter, Florette K. Treurnicht, Nicole Wolter, Carolyn Williamson, Anne von Gottberg, Richard Lessells, Houriiyah Tegally, Tulio de Oliveira

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Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2. by Chantal B F Vogels, Mallery I Breban, Isabel M Ott, Tara Alpert, Mary E Petrone, Anne E Watkins, Chaney C Kalinich, Rebecca Earnest, Jessica E Rothman, Jaqueline Goes de Jesus, Ingra Morales Claro, Giulia Magalhães Ferreira, Myuki A E Crispim, Brazil-UK CADDE Genomic Network, Lavanya Singh, Houriiyah Tegally, Ugochukwu J Anyaneji, Network for Genomic Surveillance in South Africa, Emma B Hodcroft, Christopher E Mason, Gaurav Khullar, Jessica Metti, Joel T Dudley, Matthew J MacKay, Megan Nash, Jianhui Wang, Chen Liu, Pei Hui, Steven Murphy, Caleb Neal, Eva Laszlo, Marie L Landry, Anthony Muyombwe, Randy Downing, Jafar Razeq, Tulio de Oliveira, Nuno R Faria, Ester C Sabino, Richard A Neher, Joseph R Fauver, Nathan D Grubaugh

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Hybrid versus vaccine immunity of mRNA-1273 among people living with HIV in East and Southern Africa: a prospective cohort analysis from the multicentre CoVPN 3008 (Ubuntu) studyRe... by Nigel Garrett, Asa Tapley, Aaron Hudson, Sufia Dadabhai, Bo Zhang, Nyaradzo M. Mgodi, Jessica Andriesen, Azwidihwi Takalani, Leigh H. Fisher, Jia Jin Kee, Craig A. Magaret, Manuel Villaran, John Hural, Erica Andersen-Nissen, Guido Ferarri, Maurine D. Miner, Bert Le Roux, Eduan Wilkinson, Richard Lessells, Tulio de Oliveira, Jackline Odhiambo, Parth Shah, Laura Polakowski, Margaret Yacovone, Taraz Samandari, Zvavahera Chirenje, Peter James Elyanu, Joseph Makhema, Ethel Kamuti, Harriet Nuwagaba-Biribonwoha, Sharlaa Badal-Faesen, William Brumskine, Soritha Coetzer, Rodney Dawson, Sinead Delany-Moretlwe, Andreas Henri Diacon, Samantha Fry, Katherine Margaret Gill, Zaheer Ahmed Ebrahim Hoosain, Mina C. Hosseinipour, Mubiana Inambao, Craig Innes, Steve Innes, Dishiki Kalonji, Margaret Kasaro, Priya Kassim, Noel Kayange, William Kilembe, Fatima Laher, Moelo Malahleha, Vongane Louisa Maluleke, Grace Mboya, Kirsten McHarry, Essack Mitha, Kathryn Mngadi, Pamela Mda, Tumelo Moloantoa, Cissy Kityo Mutuluuza, Nivashnee Naicker, Vimla Naicker, Anusha Nana, Annet Nanvubya, Maphoshane Nchabeleng, Walter Otieno, Elsje Louise Potgieter, Disebo Potloane, Zelda Punt, Jamil Said, Yashna Singh, Mohammed Siddique Tayob, Yacoob Vahed, Deo Ogema Wabwire, M. Juliana McElrath, James G. Kublin, Linda-Gail Bekker, Peter B. Gilbert, Lawrence Corey, Glenda E. Gray, Yunda Huang, Philip Kotze, Sharlaa Badal-Faesen, Kagisho Baepanye, Veronique Bailey, Katekani Baloyi-Oseh, Mumtaz Booley, Johannes Louis Botha, Yolande Brown, Valerie Brown, Lisa Bunts, Soritha Coetzer, Myron Cohen, Shirley Collie, Rodney Dawson, Pallabi Deb, Hana El Sahly, Jill El-Khorazaty, Andries Engelbrecht, Marianne Gildea, Dhevium Govender, Jen Hanke, Jayla Harris, Simone Hendricks, Nick Hopkinson, Haley Howell, Nzeera Ketter, Kentse Khuto, Faatima Laher Omar, Leolin Katsidzira, Kim Linton, James Ludwig, Bongile Mabilane, Matshidiso Malefo, Ndiitwani Mamushiana, Daciana Margineantu, Jeanine May, Fatima Mayat, Cindy Molitor, Yeshnee Naidoo, Michelle Nebergall, Alan Nguyen, Sarah Nikles, Bianca Noronha, Melissa Peda, Tamara Phiri, Shanthie Pillay, Sureshnee Pillay, Lori Proulx-Burns, Laurie Rinn, Lisa Sanders, Carrie Sopher, Smitha Sripathy, Michael Stirewalt, Houriiyah Tegally, Sara Thiebaud, Alicia Toledano, Stephanie Van Wyk, Shamaya Whitby, Stephany Wilcox, Eduan Wilkinson, Haven Wilvich, Charles Wiysonge, Nelisiwe Xaba, Ntokozo Xulu

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