Pandemics–Keep Calm and Carry On by Edward C. Holmes

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How accurately can we assess zoonotic risk? by Michelle Wille, Jemma L Geoghegan, Edward C Holmes

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Out of Africa: a molecular perspective on the introduction of yellow fever virus into the Americas. by Juliet E Bryant, Edward C Holmes, Alan D T Barrett

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Limited diversity of bat-associated RNA viruses in endangered and geographically isolated Christmas Island flying foxes by Ayda Susana Ortiz-Baez, Karrie Rose, Bethan J. Lang, Jane Hall, Edward C. Holmes

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Infectious disease phylodynamics with occurrence data by Leo A. Featherstone, Francesca Di Giallonardo, Edward C. Holmes, Timothy G. Vaughan, Sebastián Duchêne

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Metatranscriptomics as a tool to identify fungal species and subspecies in mixed communities – a proof of concept under laboratory conditions by Vanesa R. Marcelino, Laszlo Irinyi, John-Sebastian Eden, Wieland Meyer, Edward C. Holmes, Tania C. Sorrell

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Phylogeography of recently emerged DENV-2 in southern Viet Nam. by Maia A Rabaa, Vu Thi Ty Hang, Bridget Wills, Jeremy Farrar, Cameron P Simmons, Edward C Holmes

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Enteric viromes of healthy farmed mink (Neovison vison) from Shandong and Liaoning provinces, China by Cixiu Li, Wei Zhu, Shuqi Liu, Ruiling Niu, Lei Qian, Edward C. Holmes, Juan Li, Weifeng Shi

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Identification of hepatitis C virus in the common bed bug – a potential, but uncommon route for HCV infection? by Jiaxin Ling, Thomas Persson Vinnersten, Jenny C. Hesson, Jon Bohlin, Espen Roligheten, Edward C. Holmes, John H.-O. Pettersson

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Concurrent severe fever with thrombocytopenia syndrome virus outbreaks on multiple fox farms, China, 2023 by Jian Sun, Lei Qian, Delong Li, Xiurong Wang, Hong Zhou, Cixiu Li, Edward C. Holmes, Jianke Wang, Juan Li, Weifeng Shi

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The role of selection in shaping diversity of natural M. tuberculosis populations. by Caitlin S Pepperell, Amanda M Casto, Andrew Kitchen, Julie M Granka, Omar E Cornejo, Edward C Holmes, Bruce Birren, James Galagan, Marcus W Feldman

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Contact heterogeneity, rather than transmission efficiency, limits the emergence and spread of canine influenza virus. by Benjamin D Dalziel, Kai Huang, Jemma L Geoghegan, Nimalan Arinaminpathy, Edward J Dubovi, Bryan T Grenfell, Stephen P Ellner, Edward C Holmes, Colin R Parrish

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Five-year longitudinal surveillance reveals the continual circulation of both alpha- and beta-coronaviruses in Plateau and Gansu pikas (Ochotona spp.) at Qinghai Lake, China1 by Lin Xu, Meiqing Song, Xianzhi Tian, Ju Sun, Yanjun Wang, Mengyu Bie, Yuhai Bi, Edward C. Holmes, Yi Guan, Jianjun Chen, Juan Li, Weifeng Shi

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Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting. by Hervé Bourhy, Emmanuel Nakouné, Matthew Hall, Pierre Nouvellet, Anthony Lepelletier, Chiraz Talbi, Laurence Watier, Edward C Holmes, Simon Cauchemez, Philippe Lemey, Christl A Donnelly, Andrew Rambaut

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Spatial dynamics of human-origin H1 influenza A virus in North American swine. by Martha I Nelson, Philippe Lemey, Yi Tan, Amy Vincent, Tommy Tsan-Yuk Lam, Susan Detmer, Cécile Viboud, Marc A Suchard, Andrew Rambaut, Edward C Holmes, Marie Gramer

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Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses. by Edward C Holmes, Elodie Ghedin, Naomi Miller, Jill Taylor, Yiming Bao, Kirsten St George, Bryan T Grenfell, Steven L Salzberg, Claire M Fraser, David J Lipman, Jeffery K Taubenberger

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Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks. by Joseph Hughes, Richard C Allen, Marc Baguelin, Katie Hampson, Gregory J Baillie, Debra Elton, J Richard Newton, Paul Kellam, James L N Wood, Edward C Holmes, Pablo R Murcia

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Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission. by Jayna Raghwani, Andrew Rambaut, Edward C Holmes, Vu Ty Hang, Tran Tinh Hien, Jeremy Farrar, Bridget Wills, Niall J Lennon, Bruce W Birren, Matthew R Henn, Cameron P Simmons

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Dengue virus in sub-tropical northern and central Viet Nam: population immunity and climate shape patterns of viral invasion and maintenance. by Maia A Rabaa, Cameron P Simmons, Annette Fox, Mai Quynh Le, Thuy Thi Thu Nguyen, Hai Yen Le, Robert V Gibbons, Xuyen Thanh Nguyen, Edward C Holmes, John G Aaskov

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Phylodynamics and human-mediated dispersal of a zoonotic virus. by Chiraz Talbi, Philippe Lemey, Marc A Suchard, Elbia Abdelatif, Mehdi Elharrak, Jalal Nourlil, Abdellah Faouzi, Juan E Echevarría, Sonia Vazquez Morón, Andrew Rambaut, Nicholas Campiz, Andrew J Tatem, Edward C Holmes, Hervé Bourhy

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