Effect of HIV-1 subtypes on disease progression in rural Uganda: a prospective clinical cohort study. by Deogratius Ssemwanga, Rebecca N Nsubuga, Billy N Mayanja, Frederick Lyagoba, Brian Magambo, Dave Yirrell, Lieve Van der Paal, Heiner Grosskurth, Pontiano Kaleebu

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Case Reports of Human Monkeypox Virus Infections, Uganda, 2024 by Nicholas Bbosa, Stella E. Nabirye, Hamidah S. Namagembe, Ronald Kiiza, Alfred Ssekagiri, Mary Munyagwa, Arafat Bwambale, Stephen Bagonza, Henry Kyobe Bosa, Robert Downing, Julius Lutwama, Pontiano Kaleebu, Deogratius Ssemwanga

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A novel post-mortem pathogen discovery program detects an outbreak of Echovirus E7: Uganda, 2022–2023 by Sonja L. Weiss, Sonja L. Weiss, Nicholas Bbosa, Nicholas Bbosa, Nicholas Bbosa, Gregory S. Orf, Gregory S. Orf, Michael G. Berg, Michael G. Berg, Deogratius Ssemwanga, Deogratius Ssemwanga, Sam Kalungi, Sam Kalungi, Stephen Balinandi, Maximillian Mata, Maximillian Mata, Henry Kyobe Bosa, Henry Kyobe Bosa, Henry Kyobe Bosa, Stella E. Nabirye, Joshua Buule, Tom Lutalo, Angela Havron, Angela Havron, Robert Downing, Mary A. Rodgers, Mary A. Rodgers, Francisco Averhoff, Francisco Averhoff, Gavin A. Cloherty, Gavin A. Cloherty, Pontiano Kaleebu, Pontiano Kaleebu

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Deciphering the complex distribution of human immunodeficiency virus type 1 subtypes among different cohorts in Northern Tanzania. by Harr F Njai, Fiona M Ewings, Eric Lyimo, Vincent Foulongne, Dhamira Ngerageza, Aika Mongi, Deogratius Ssemwanga, Aura Andreasen, Balthazar Nyombi, Tony Ao, Denna Michael, Mark Urassa, Jim Todd, Basia Zaba, John Changalucha, Richard Hayes, Saidi H Kapiga

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Quantifying prevalence and risk factors of HIV multiple infection in Uganda from population-based deep-sequence data. by Michael A Martin, Andrea Brizzi, Xiaoyue Xi, Ronald Moses Galiwango, Sikhulile Moyo, Deogratius Ssemwanga, Alexandra Blenkinsop, Andrew D Redd, Lucie Abeler-Dörner, Christophe Fraser, Steven J Reynolds, Thomas C Quinn, Joseph Kagaayi, David Bonsall, David Serwadda, Gertrude Nakigozi, Godfrey Kigozi, M Kate Grabowski, Oliver Ratmann, with the PANGEA-HIV Consortium and the Rakai Health Sciences Program

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Emerging SARS-CoV-2 Variants in Uganda in the Era of COVID-19 Vaccination by Nicholas Bbosa, Ronald Kiiza, Alfred Ssekagiri, Hamidah Suubi Namagembe, Stella Esther Nabirye, Danstan Kabuuka, Cleophous Rwankindo, Annet Kisakye, Yonas T. Woldemariam, Sylvia Kusemererwa, Terry A. Ongaria, Ayoub Kakande, Andrew Abaasa, Geofrey Kimbugwe, Henry Kyobe Bosa, Alfred Driwale, Jason M. Mwenda, Archibald K. Worwui, James Humphreys, Sandra Cohuet, Alison M. Elliott, Eugene Ruzagira, Pontiano Kaleebu, Deogratius Ssemwanga

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HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data by Tanya Golubchik, Lucie Abeler-Dörner, Matthew Hall, Chris Wymant, David Bonsall, George Macintyre-Cockett, Laura Thomson, Jared M. Baeten, Connie L. Celum, Ronald M. Galiwango, Barry Kosloff, Mohammed Limbada, Andrew Mujugira, Nelly R. Mugo, Astrid Gall, François Blanquart, Margreet Bakker, Daniela Bezemer, Swee Hoe Ong, Jan Albert, Norbert Bannert, Jacques Fellay, Barbara Gunsenheimer-Bartmeyer, Huldrych F. Günthard, Pia Kivelä, Roger D. Kouyos, Laurence Meyer, Kholoud Porter, Ard van Sighem, Mark van der Valk, Ben Berkhout, Paul Kellam, Marion Cornelissen, Peter Reiss, Helen Ayles, David N. Burns, Sarah Fidler, Mary Kate Grabowski, Richard Hayes, Joshua T. Herbeck, Joseph Kagaayi, Pontiano Kaleebu, Jairam R. Lingappa, Deogratius Ssemwanga, Susan H. Eshleman, Myron S. Cohen, Oliver Ratmann, Oliver Laeyendecker, Christophe Fraser, the HPTN 071 (PopART) Phylogenetics protocol team, the BEEHIVE consortium and the PANGEA consortium

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Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis. by Soo-Yon Rhee, Jose Luis Blanco, Michael R Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese, Raph L Hamers, Silvia Bertagnolio, Tobias F Rinke de Wit, Avelin F Aghokeng, Jan Albert, Radko Avi, Santiago Avila-Rios, Pascal O Bessong, James I Brooks, Charles A B Boucher, Zabrina L Brumme, Michael P Busch, Hermann Bussmann, Marie-Laure Chaix, Bum Sik Chin, Toni T D'Aquin, Cillian F De Gascun, Anne Derache, Diane Descamps, Alaka K Deshpande, Cyrille F Djoko, Susan H Eshleman, Herve Fleury, Pierre Frange, Seiichiro Fujisaki, P Richard Harrigan, Junko Hattori, Africa Holguin, Gillian M Hunt, Hiroshi Ichimura, Pontiano Kaleebu, David Katzenstein, Sasisopin Kiertiburanakul, Jerome H Kim, Sung Soon Kim, Yanpeng Li, Irja Lutsar, Lynn Morris, Nicaise Ndembi, Kee Peng Ng, Ramesh S Paranjape, Martine Peeters, Mario Poljak, Matt A Price, Manon L Ragonnet-Cronin, Gustavo Reyes-Terán, Morgane Rolland, Sunee Sirivichayakul, Davey M Smith, Marcelo A Soares, Vincent V Soriano, Deogratius Ssemwanga, Maja Stanojevic, Mariane A Stefani, Wataru Sugiura, Somnuek Sungkanuparph, Amilcar Tanuri, Kok Keng Tee, Hong-Ha M Truong, David A M C van de Vijver, Nicole Vidal, Chunfu Yang, Rongge Yang, Gonzalo Yebra, John P A Ioannidis, Anne-Mieke Vandamme, Robert W Shafer

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