HiCDiffusion - diffusion-enhanced, transformer-based prediction of chromatin interactions from DNA sequences by Mateusz Chiliński, Dariusz Plewczynski

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Application of Machine Learning Method in Genomics and Proteomics by Hao Lin, Wei Chen, Ramu Anandakrishnan, Dariusz Plewczynski

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ConsensuSV-ONT – A modern method for accurate structural variant calling by Antoni Pietryga, Mateusz Chiliński, Sachin Gadakh, Dariusz Plewczynski

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Improved cohesin HiChIP protocol and bioinformatic analysis for robust detection of chromatin loops and stripes by Karolina Buka, Zofia Parteka-Tojek, Abhishek Agarwal, Michał Denkiewicz, Sevastianos Korsak, Mateusz Chiliński, Krzysztof H. Banecki, Dariusz Plewczynski

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GPX4 is a key ferroptosis regulator orchestrating T cells and CAR-T-cells sensitivity to ferroptosis by Marta Kłopotowska, Iwona Baranowska, Szymon Hajduk, Anna Jurga, Natalia Leśniowska, Michał Łaźniewski, Monika Granica, Marta Krawczyk, Milena Dziewicka, Agnieszka Graczyk, Jan Słupski, Radosław Zagożdżon, Dariusz Plewczynski, Magdalena Winiarska, Malgorzata Bajor

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Evolutionary divergence in CTCF-mediated chromatin topology drives transcriptional innovation in humans by Xia Wu, Dan Xiong, Rong Liu, Xingqiang Lai, Yuhan Tian, Ziying Xie, Li Chen, Lanqi Hu, Jingjing Duan, Xinyu Gao, Xian Zeng, Wei Dong, Ting Xu, Fang Fu, Xin Yang, Xinlai Cheng, Dariusz Plewczynski, Minji Kim, Wenjun Xin, Tianyun Wang, Andy Peng Xiang, Zhonghui Tang

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