Learning the Structure of Bayesian Networks: A Quantitative Assessment of the Effect of Different Algorithmic Schemes by Stefano Beretta, Mauro Castelli, Ivo Gonçalves, Roberto Henriques, Daniele Ramazzotti

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Integrative multi-omics analysis enables a comprehensive characterization of prostate cancer and unveils metastasis-associated candidate biomarkers by Matteo Villa, Giorgio Cazzaniga, Maddalena Bolognesi, Federica Malighetti, Valentina Crippa, Andrea Aroldi, Giorgio Bozzini, Fabio Pagni, Rocco Piazza, Luca Mologni, Daniele Ramazzotti

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Integrative analysis of KEAP1/NFE2L2 alterations across 3600+ tumors reveals an NRF2 expression signature as a prognostic biomarker in cancer by Valentina Crippa, Nicoletta Cordani, Alberto Maria Villa, Federica Malighetti, Matteo Villa, Luca Sala, Andrea Aroldi, Rocco Piazza, Diego Cortinovis, Luca Mologni, Daniele Ramazzotti

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Anaplastic Lymphoma Kinase (ALK) Inhibitors Enhance Phagocytosis Induced by CD47 Blockade in Sensitive and Resistant ALK-Driven Malignancies by Federica Malighetti, Matteo Villa, Mario Mauri, Simone Piane, Valentina Crippa, Ilaria Crespiatico, Federica Cocito, Elisa Bossi, Carolina Steidl, Ivan Civettini, Chiara Scollo, Daniele Ramazzotti, Carlo Gambacorti-Passerini, Rocco Piazza, Luca Mologni, Andrea Aroldi

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Protocol for obtaining cancer type and subtype predictions using subSCOPE by Jasleen K. Grewal, A. Gordon Robertson, Kyle Ellrott, Christopher K. Wong, Jordan A. Lee, Christina Yau, Bahar Tercan, Mauro A.A. Castro, Christopher C. Benz, Jean C. Zenklusen, Andrew D. Cherniack, Peter W. Laird, Steven J.M. Jones, Theo A. Knijnenburg, Mauro A.A. Castro, Vinicius S. Chagas, Victor H. Apolonio, Verena Friedl, Joshua M. Stuart, Vladislav Uzunangelov, Christopher K. Wong, Jesper B. Andersen, Andrew D. Cherniack, Galen F. Gao, Gad Getz, Stephanie H. Hoyt, Whijae Roh, Lindsay Westlake, Christopher C. Benz, Jasleen K. Grewal, Steven J.M. Jones, A. Gordon Robertson, Samantha J. Caesar-Johnson, John A. Demchok, Ina Felau, Anab Kemal, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Rehan Akbani, Bradley M. Broom, Zhenlin Ju, Andre Schultz, Akinyemi I. Ojesina, Katherine A. Hoadley, Avantika Lal, Daniele Ramazzotti, Chen Wang, Alexander J. Lazar, Lewis R. Roberts, Taek-Kyun Kim, Ilya Shmulevich, Bahar Tercan, Paulos Charonyktakis, Vincenzo Lagani, Ioannis Tsamardinos, Esther Drill, Ronglai Shen, Martin L. Ferguson, Kami E. Chiotti, Kyle Ellrott, Brian J. Karlberg, Jordan A. Lee, Eve Lowenstein, Adam Struck, Paul T. Spellman, Christina Yau, Toshinori Hinoue, Peter W. Laird

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