Large-Scale Genomic Analysis of SARS-CoV-2 Omicron BA.5 Emergence, United States by Kien Pham, Chrispin Chaguza, Rafael Lopes, Ted Cohen, Emma Taylor-Salmon, Melanie Wilkinson, Volha Katebi, Nathan D. Grubaugh, Verity Hill

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19 Nasopharyngeal resistome under antibiotic pressure; the long-term effects of mass drug administration (MDA) of azithromycin to pre-school children in Malawi by Lucy O’Connor, Akuzike Kalizang’oma, Victoria Dyster, Chrispin Chaguza, Brenda Kwambana-Adams, Farouk Bonomali, Comfort Brown, Jacqueline Msefula, Khumbo Kalua, Robin Bailey, Thandie Mwalukomo, Dorothee Van Breevoort, Jennifer Cornick, Neil French, Todd D. Swarthout, Robert Heyderman

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Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections. by Ke Li, Chrispin Chaguza, Julian Stamp, Yi Ting Chew, Nicholas F G Chen, David Ferguson, Sameer Pandya, Nick Kerantzas, Wade Schulz, Yale SARS-CoV-2 Genomic Surveillance Initiative, Anne M Hahn, C Brandon Ogbunugafor, Virginia E Pitzer, Lorin Crawford, Daniel M Weinberger, Nathan D Grubaugh

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Integrated Analysis of the 2022 SARS-CoV-2 Omicron Lineage Replacement Dynamics in Connecticut, US by Nicholas F. G. Chen, Kien Pham, Chrispin Chaguza, Rafael Lopes, Fayette Klaassen, Chaney C. Kalinich, Yale SARS-CoV-2 Genomic Surveillance Initiative, Nicholas Kerantzas, Sameer Pandya, David Ferguson, Wade Schulz, Daniel M. Weinberger, Virginia E. Pitzer, Joshua L. Warren, Nathan D. Grubaugh, Anne M. Hahn

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