Negativeome characterization and decontamination in early-life virome studies by Nataliia Kuzub, Alexander Kurilshikov, Alexandra Zhernakova, Sanzhima Garmaeva

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Microbial vitamin production mediates dietary effects on diabetic risk by Daoming Wang, Van T. Pham, Robert E. Steinert, Alexandra Zhernakova, Jingyuan Fu

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Identification and characterization of Faecalibacterium prophages rich in diversity-generating retroelements by Anastasia Gulyaeva, Lei Liu, Sanzhima Garmaeva, Marloes Kruk, Rinse K. Weersma, Hermie J. M. Harmsen, Alexandra Zhernakova

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Early-life development of the gut virome and plasmidome: A longitudinal study in cesarean-born infants by Asier Fernández-Pato, Trishla Sinha, Sanzhima Garmaeva, Anastasia Gulyaeva, Nataliia Kuzub, Simon Roux, Jingyuan Fu, Alexander Kurilshikov, Alexandra Zhernakova

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A reconceptualized framework for human microbiome transmission in early life by Seth Rakoff-Nahoum, Justine Debelius, Mireia Valles-Colomer, Hanna Theodora Noordzij, Maria Esteban-Torres, Alexandra Zhernakova, Nele Brusselaers, Veronika Kuchařová Pettersen

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High-resolution analysis of the treated coeliac disease microbiome reveals strain-level variation by Jelle Slager, Hanna L. Simpson, Ranko Gacesa, Lianmin Chen, Ineke L. Tan, Jody Gelderloos, Astrid Maatman, Cisca Wijmenga, Alexandra Zhernakova, Jingyuan Fu, Rinse K. Weersma, Gieneke Gonera, Iris H. Jonkers, Sebo Withoff

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Patient attitudes towards faecal sampling for gut microbiome studies and clinical care reveal positive engagement and room for improvement. by Laura A Bolte, Marjolein A Y Klaassen, Valerie Collij, Arnau Vich Vila, Jingyuan Fu, Taco A van der Meulen, Jacco J de Haan, Gerbrig J Versteegen, Aafje Dotinga, Alexandra Zhernakova, Cisca Wijmenga, Rinse K Weersma, Floris Imhann

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Association between gut microbiome profiles and host metabolic health across the life course: a population-based studyResearch in context by Ruolin Li, Alexander Kurilshikov, Shuyue Yang, Julie A.E. van Oortmerssen, Arno van Hilten, Fariba Ahmadizar, Gennady Roshchupkin, Robert Kraaij, Liesbeth Duijts, Jingyuan Fu, M. Kamran Ikram, Vincent W.V. Jaddoe, André G. Uitterlinden, Fernando Rivadeneira, Maryam Kavousi, Alexandra Zhernakova, Carolina Medina-Gomez

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Integrated fecal microbiome–metabolome signatures reflect stress and serotonin metabolism in irritable bowel syndrome by Zlatan Mujagic, Melpomeni Kasapi, Daisy MAE Jonkers, Isabel Garcia-Perez, Lisa Vork, Zsa Zsa R.M. Weerts, Jose Ivan Serrano-Contreras, Alexandra Zhernakova, Alexander Kurilshikov, Jamie Scotcher, Elaine Holmes, Cisca Wijmenga, Daniel Keszthelyi, Jeremy K Nicholson, Joram M Posma, Ad AM Masclee

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Host and environmental determinants of human milk oligosaccharides and microbiota in the Lifelines NEXT cohort by Johanne E. Spreckels, Alexander Kurilshikov, Asier Fernández-Pato, Fan Liu, Siobhan Brushett, Corinna Bang, Daria V. Zhernakova, Marloes Kruk, Trishla Sinha, Sanzhima Garmaeva, Milla F. Brandao Gois, Esteban A. Lopera-Maya, Laura A. Bolte, Soesma A. Jankipersadsing, Andre Franke, Hanne L.P. Tytgat, Sara Colombo Mottaz, Jingyuan Fu, Сyrus A. Mallon, Sander S. van Leeuwen, Ranko Gacesa, Alexandra Zhernakova

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Human genetics in rheumatoid arthritis guides a high-throughput drug screen of the CD40 signaling pathway. by Gang Li, Dorothée Diogo, Di Wu, Jim Spoonamore, Vlado Dancik, Lude Franke, Fina Kurreeman, Elizabeth J Rossin, Grant Duclos, Cathy Hartland, Xuezhong Zhou, Kejie Li, Jun Liu, Philip L De Jager, Katherine A Siminovitch, Alexandra Zhernakova, Soumya Raychaudhuri, John Bowes, Steve Eyre, Leonid Padyukov, Peter K Gregersen, Jane Worthington, Rheumatoid Arthritis Consortium International (RACI), Namrata Gupta, Paul A Clemons, Eli Stahl, Nicola Tolliday, Robert M Plenge

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Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci. by Alexandra Zhernakova, Eli A Stahl, Gosia Trynka, Soumya Raychaudhuri, Eleanora A Festen, Lude Franke, Harm-Jan Westra, Rudolf S N Fehrmann, Fina A S Kurreeman, Brian Thomson, Namrata Gupta, Jihane Romanos, Ross McManus, Anthony W Ryan, Graham Turner, Elisabeth Brouwer, Marcel D Posthumus, Elaine F Remmers, Francesca Tucci, Rene Toes, Elvira Grandone, Maria Cristina Mazzilli, Anna Rybak, Bozena Cukrowska, Marieke J H Coenen, Timothy R D J Radstake, Piet L C M van Riel, Yonghong Li, Paul I W de Bakker, Peter K Gregersen, Jane Worthington, Katherine A Siminovitch, Lars Klareskog, Tom W J Huizinga, Cisca Wijmenga, Robert M Plenge

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