Viral Dynamic Models During COVID‐19: Are We Ready for the Next Pandemic? by Aurelien Marc, Joshua T. Schiffer, France Mentré, Alan S. Perelson, Jérémie Guedj

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A multiscale model of the action of a capsid assembly modulator for the treatment of chronic hepatitis B. by Sarafa A Iyaniwura, Tyler Cassidy, Ruy M Ribeiro, Alan S Perelson

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Treatment-mediated alterations in HIV fitness preserve CD4+ T cell counts but have minimal effects on viral load. by Naveen K Vaidya, Libin Rong, Vincent C Marconi, Daniel R Kuritzkes, Steven G Deeks, Alan S Perelson

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A consensus mathematical model of vaccine-induced antibody dynamics for multiple vaccine platforms and pathogens by Kristen M. Wilding, Carmen Molina-París, Jessica Z. Kubicek-Sutherland, Benjamin McMahon, Alan S. Perelson, Ruy M. Ribeiro

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Triple combination antiviral drug (TCAD) composed of amantadine, oseltamivir, and ribavirin impedes the selection of drug-resistant influenza A virus. by Justin D Hoopes, Elizabeth M Driebe, Erin Kelley, David M Engelthaler, Paul S Keim, Alan S Perelson, Libin Rong, Gregory T Went, Jack T Nguyen

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Effect of 1918 PB1-F2 expression on influenza A virus infection kinetics. by Amber M Smith, Frederick R Adler, Julie L McAuley, Ryan N Gutenkunst, Ruy M Ribeiro, Jonathan A McCullers, Alan S Perelson

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Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion. by Tin Phan, Jessica M Conway, Nicole Pagane, Jasmine Kreig, Narmada Sambaturu, Sarafa Iyaniwura, Jonathan Z Li, Ruy M Ribeiro, Ruian Ke, Alan S Perelson

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Mechanistic basis of post-treatment control of SIV after anti-α4β7 antibody therapy. by Chad R Wells, Youfang Cao, David P Durham, Siddappa N Byrareddy, Aftab A Ansari, Nancy H Ruddle, Jeffrey P Townsend, Alison P Galvani, Alan S Perelson

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Post-recovery viral shedding shapes wastewater-based epidemiological inferences by Tin Phan, Samantha Brozak, Bruce Pell, Stanca M. Ciupe, Ruian Ke, Ruy M. Ribeiro, Anna Gitter, Kristina D. Mena, Alan S. Perelson, Yang Kuang, Fuqing Wu

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Reversion and T cell escape mutations compensate the fitness loss of a CD8+ T cell escape mutant in their cognate transmitted/founder virus. by Hongshuo Song, Bhavna Hora, Tanmoy Bhattacharya, Nilu Goonetilleke, Michael K P Liu, Kevin Wiehe, Hui Li, Shilpa S Iyer, Andrew J McMichael, Alan S Perelson, Feng Gao

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Quantifying the diversification of hepatitis C virus (HCV) during primary infection: estimates of the in vivo mutation rate. by Ruy M Ribeiro, Hui Li, Shuyi Wang, Mark B Stoddard, Gerald H Learn, Bette T Korber, Tanmoy Bhattacharya, Jeremie Guedj, Erica H Parrish, Beatrice H Hahn, George M Shaw, Alan S Perelson

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A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2. by Kwang Su Kim, Keisuke Ejima, Shoya Iwanami, Yasuhisa Fujita, Hirofumi Ohashi, Yoshiki Koizumi, Yusuke Asai, Shinji Nakaoka, Koichi Watashi, Kazuyuki Aihara, Robin N Thompson, Ruian Ke, Alan S Perelson, Shingo Iwami

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Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation to analyze extracellular viral markers. by Kosaku Kitagawa, Kwang Su Kim, Masashi Iwamoto, Sanae Hayashi, Hyeongki Park, Takara Nishiyama, Naotoshi Nakamura, Yasuhisa Fujita, Shinji Nakaoka, Kazuyuki Aihara, Alan S Perelson, Lena Allweiss, Maura Dandri, Koichi Watashi, Yasuhito Tanaka, Shingo Iwami

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SIV proviruses seeded later in infection are harbored in short-lived CD4+ T cells by Narmada Sambaturu, Emily J. Fray, Vivek Hariharan, Fengting Wu, Carolin Zitzmann, Francesco R. Simonetti, Dan H. Barouch, Janet D. Siliciano, Robert F. Siliciano, Ruy M. Ribeiro, Alan S. Perelson, Carmen Molina-París, Thomas Leitner

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Prediction of cccDNA dynamics in hepatitis B patients by a combination of serum surrogate markers. by Kwang Su Kim, Masashi Iwamoto, Kosaku Kitagawa, Hyeongki Park, Sanae Hayashi, Senko Tsukuda, Takeshi Matsui, Masanori Atsukawa, Kentaro Matsuura, Natthaya Chuaypen, Pisit Tangkijvanich, Lena Allweiss, Takara Nishiyama, Naotoshi Nakamura, Yasuhisa Fujita, Eiryo Kawakami, Shinji Nakaoka, Masamichi Muramatsu, Kazuyuki Aihara, Takaji Wakita, Alan S Perelson, Maura Dandri, Koichi Watashi, Shingo Iwami, Yasuhito Tanaka

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Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing. by Will Fischer, Vitaly V Ganusov, Elena E Giorgi, Peter T Hraber, Brandon F Keele, Thomas Leitner, Cliff S Han, Cheryl D Gleasner, Lance Green, Chien-Chi Lo, Ambarish Nag, Timothy C Wallstrom, Shuyi Wang, Andrew J McMichael, Barton F Haynes, Beatrice H Hahn, Alan S Perelson, Persephone Borrow, George M Shaw, Tanmoy Bhattacharya, Bette T Korber

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