A novel barcoded nanopore sequencing workflow of high-quality, full-length bacterial 16S amplicons for taxonomic annotation of bacterial isolates and complex microbial communities by Julian Dommann, Jakob Kerbl-Knapp, Diana Albertos Torres, Adrian Egli, Jennifer Keiser, Pierre H. H. Schneeberger

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Quantifying aminoglycoside resistance in extended-spectrum beta-lactamase (ESBL)-producing Enterobacterales clinical isolates: a retrospective cohort study by Isabelle Vock, Lisandra Aguilar-Bultet, Nina Khanna, Adrian Egli, Elisabeth Wehrle-Wieland, Pranita D. Tamma, Sarah Tschudin Sutter

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The Impact of Rapid Molecular Diagnostics for Influenza on Antibiotic Stewardship in the Emergency Department—An Observational Retrospective Study by Elisa Roth, Marco Cattaneo, Yvonne Hollenstein, Maja Weisser, Stefano Bassetti, Sarah Tschudin Sutter, Roland Bingisser, Christian H. Nickel, Adrian Egli

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Multi-omics profiling of cross-resistance between ceftazidime-avibactam and meropenem identifies common and strain-specific mechanisms in Pseudomonas aeruginosa clinical isolates by Bartosz J. Bartmanski, Anja Bösch, Steven Schmitt, Niranjan R. Ireddy, Qun Ren, Jacqueline Findlay, Adrian Egli, Maria Zimmermann-Kogadeeva, Baharak Babouee Flury

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Correction: Multifactorial resistance mechanisms associated with resistance to ceftazidime-avibactam in clinical Pseudomonas aeruginosa isolates from Switzerland by Baharak Babouee Flury, Baharak Babouee Flury, Baharak Babouee Flury, Anja Bösch, Anja Bösch, Valentin Gisler, Valentin Gisler, Adrian Egli, Salome N. Seiffert, Oliver Nolte, Jacqueline Findlay

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Multifactorial resistance mechanisms associated with resistance to ceftazidime-avibactam in clinical Pseudomonas aeruginosa isolates from Switzerland by Baharak Babouee Flury, Baharak Babouee Flury, Baharak Babouee Flury, Anja Bösch, Anja Bösch, Valentin Gisler, Valentin Gisler, Adrian Egli, Salome N. Seiffert, Oliver Nolte, Jacqueline Findlay

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Gut microbiota composition as a candidate risk factor for dimethyl fumarate-induced lymphopenia in multiple sclerosis by Martin Diebold, Marco Meola, Srinithi Purushothaman, Lena K Siewert, Elisabeth Pössnecker, Tim Roloff, Raija LP Lindberg, Jens Kuhle, Ludwig Kappos, Tobias Derfuss, Adrian Egli, Anne-Katrin Pröbstel

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Diagnostic algorithm for the detection of carbapenemases and extended-spectrum β-lactamases in carbapenem-resistant Pseudomonas aeruginosa by Stefano Mancini, Laia Garcia-Verellen, Helena M. B. Seth-Smith, Peter M. Keller, Natalia Kolesnik-Goldmann, Muhammad Ali Syed, Irfan Ullah, Vladimira Hinic, Tim Roloff, Adrian Egli, Oliver Nolte

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Clinical characteristics and serological profiles of Lyme disease in children: a 15-year retrospective cohort study in SwitzerlandResearch in context by Beat M. Greiter, Semjon Sidorov, Ester Osuna, Michelle Seiler, Christa Relly, Annette Hackenberg, Isabelle Luchsinger, Elvira Cannizzaro, Roland Martin, Martina Marchesi, Stefanie von Felten, Adrian Egli, Christoph Berger, Patrick M. Meyer Sauteur

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Rapid detection and capture of clinical Escherichia coli strains mediated by OmpA-targeting nanobodies by Michèle Sorgenfrei, Lea M. Hürlimann, Andrea Printz, Fanny Wegner, Damien Morger, Fabian Ackle, Mélissa M. Remy, Grzegorz Montowski, Hans-Anton Keserue, Aline Cuénod, Frank Imkamp, Adrian Egli, Peter M. Keller, Markus A. Seeger

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Completing the BASEL phage collection to unlock hidden diversity for systematic exploration of phage-host interactions. by Dorentina Humolli, Damien Piel, Enea Maffei, Yannik Heyer, Elia Agustoni, Aisylu Shaidullina, Luc Willi, Patrick Imwinkelried, Fabienne Estermann, Aline Cuénod, Dominik P Buser, Carola Alampi, Mohamed Chami, Adrian Egli, Sebastian Hiller, Matthew Dunne, Alexander Harms

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The microbiota vault initiative: safeguarding Earth’s microbial heritage for future generations by Maria G. Dominguez-Bello, Dominik Steiger, Manuel Fankhauser, Adrian Egli, Pascale Vonaesch, Nicholas A. Bokulich, Anton Lavrinienko, Christian Hoffmann, Petra Zimmermann, Abdifatah Muhummed, Somphou Sayasone, Amma Larbi, Segla Wilfrid Padonou, Jakob Zinsstag, Rea Tschopp, Chalat Santivarangkna, Diana Albertos Torres, Yuen Yi Li, Vanni Benvenga, Youzheng Teo, Marcel Houngbédji, Alex Kwarteng, Rob Knight, Jack A. Gilbert, Martin J. Blaser

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Identification of influenza urban transmission patterns by geographical, epidemiological and whole genome sequencing data: protocol for an observational study by Andreas Buser, Sarah Tschudin-Sutter, Adrian Egli, Claudia Saalfrank, Nina Goldman, Myrta Brunner, Yvonne Hollenstein, Thomas Vogel, Noémie Augustin, Daniel Wüthrich, Helena M.B. Seth-Smith, Elisa Roth, Mohammedyaseen Syedbasha, Nicola F. Mueller, Dominik Vogt, Jan Bauer, Nadezhda Amar-Sliwa, Dominik M. Meinel, Olivier Dubuis, Michael Naegele, Christian H. Nickel, Andreas Zeller, Nicole Ritz, Manuel Battegay, Tanja Stadler, Rita Schneider-Sliwa

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Blood-borne immune cells carry low biomass DNA remnants of microbes in patients with colorectal cancer or inflammatory bowel disease by Yasser Morsy, Åsa Walberg, Paulina Wawrzyniak, Barbara Hubeli, Luca Truscello, Celine Mamie, Ania Niechcial, Emilie Gueguen, Roberto Manzini, Claudia Gottier, Silvia Lang, Sylvie Scharl, Sena Blümel, Luc Biedermann, Gerhard Rogler, Matthias Turina, Michaela Ramser, Henrik Petrowsky, Isabelle C. Arnold, Sebastian Zeissig, Nicola Zamboni, Adrian Egli, Jan Hendrik Niess, Petr Hruz, Alexander Knuth, Ralph Fritsch, Markus G. Manz, Marcin Wawrzyniak, Michael Scharl

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